Entry information : FspDCMDn01
Entry ID 4728
Creation 2007-02-22 (Filippo Passardi)
Last sequence changes 2007-02-22 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2008-09-26 (Christophe Dunand)
Peroxidase information: FspDCMDn01
Name FspDCMDn01
Class Double CMD (no peroxidase activity)    [Orthogroup: DCMDn001]
Taxonomy Bacteria Actinobacteria Actinobacteria (class) Frankiaceae Frankia
Organism Frankia sp.    [TaxId: 1855 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value FspDCMDn01
start..stop
S start..stop
SmeDCMDn 105 2e-27 62..291 42..242
SmeDCMDn 54 0.00000001 62..138 169..245
SmeDCMDn 53 0.00000002 216..296 40..120
AvDCMDn 99 2e-24 27..291 78..304
AvDCMDn 61 0.00000000005 194..296 81..182
AvDCMDn 54 0.00000001 62..138 231..307
BjaDCMDn 96 1e-23 62..291 63..263
BjaDCMDn 58 0.0000000003 207..296 52..141
BjaDCMDn 50 0.0000002 62..138 190..266
RleDCMDn 94 1e-22 63..287 71..263
RleDCMDn 57 0.0000000008 62..139 197..274
RleDCMDn 57 0.000000001 217..297 69..149
Literature and cross-references FspDCMDn01
Literature Copeland A. et al. US DOE Joint Genome Institute (JGI-PGF). Sequencing of the draft genome and assembly of Frankia sp. EAN1pec. Unpublished. Submitted (23-JUN-2005)
Protein ref. UniProtKB:   A8LEL8
DNA ref. GenBank:   CP000820 (5627713..5628615)
Protein sequence: FspDCMDn01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   300
PWM (Da):   %s   32104.56  
PI (pH):   %s   5.99
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MMTQAQREAA YERVRRELGI DRVGTAPDAP VLRSRQGGAP ARPAYALPVE AEIHGAQLYE YEIWGRSGLD LRTRSFITVA VLTALGREDQ LYRYVNSALN IGITPEEIHE TLLHAGVYSG  LPAWENAAGV AGEVFVARGL VPAGSGAPVE PKPAMDHEER RAARNRVVAA LGVGRIGLGP DAPLLEPLPG SPFPAAKPGR LAFEQELAGI TADYGYGEVW GRPGLDLHTR SFITVSVLQV 
QYQNDQLHIH VNNALNLGIT PEAVGEAITQ AGIYDGGSGW HNAMNVARHV FLQHGIVEGD 

Retrieve as FASTA  
Remarks Complete sequence from Genomic. Strain="EAN1pec".