Entry information : MsuDCMDn
Entry ID 4733
Creation 2007-02-22 (Filippo Passardi)
Last sequence changes 2016-01-22 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-01-25 (Christophe Dunand)
Peroxidase information: MsuDCMDn
Name MsuDCMDn
Class Double CMD (no peroxidase activity)    [Orthogroup: DCMDn001]
Taxonomy Bacteria Proteobacteria Gammaproteobacteria Pasteurellaceae Basfia
Organism Mannheimia succiniciproducens    [TaxId: 157673 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MsuDCMDn
start..stop
S start..stop
RleDCMDn 195 2e-62 5..230 45..268
RleDCMDn 88 3e-21 10..106 177..273
BjaDCMDn 187 2e-59 7..230 40..260
BjaDCMDn 89 1e-21 2..106 162..266
SmeDCMDn 181 2e-57 7..231 19..240
SmeDCMDn 88 2e-21 11..106 150..245
SmeDCMDn 69 0.00000000000002 140..232 23..115
PstDCMDn 181 5e-57 12..226 38..250
PstDCMDn 96 3e-24 10..109 163..262
PstDCMDn 66 0.0000000000004 140..233 37..130
Literature and cross-references MsuDCMDn
Literature Hong,S.H. et al., The genome sequence of the capnophilic rumen bacterium Mannheimia
succiniciproducens. Nat. Biotechnol. 22 (10), 1275-1281 (2004)
Protein ref. GenBank:   AAU38031.1 UniProtKB:   Q65SM9
DNA ref. GenBank:   AE016827 (1422650..1423351)
Protein sequence: MsuDCMDn
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   233
PWM (Da):   %s   25962.25  
PI (pH):   %s   6.15
Sequence
Send to BLAST
Send to Peroxiscan
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MSHKSALSPE QIYSVSPTLA TYTKTLISDD MWNRPILSKH DRAMITVAAL IARQQTMGMK HYFNLAMDLG VSAKEMSEVV LHMAFYAGWS NAFAAVDILK DIFAERGISP DQLPTLEPEM 
LPMSQALPDN DFFMGLIDQN IRSFVPKLAD NSTDVLYHQV WLRPDLNPRD RNLISVTALI AQGLYDFVTV YSLRAKAVGI SKEEMQELLA HLAFYAGTPY IVPAIPHVAK AYE 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Strain="MBEL55E".
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCACACA AATCAGCATT AAGCCCTGAG CAAATTTACA GCGTGTCGCC AACCTTGGCA ACCTACACCA AAACGCTTAT TTCAGACGAT ATGTGGAACC GCCCCATTTT AAGCAAACAC  GATCGTGCAA TGATTACGGT GGCGGCACTG ATTGCCCGTC AGCAAACCAT GGGCATGAAA CATTATTTCA ATTTGGCGAT GGATTTAGGC GTAAGCGCAA AAGAAATGTC GGAAGTGGTA  TTGCACATGG CGTTTTACGC TGGCTGGTCA AACGCTTTTG CGGCGGTGGA TATTTTGAAA GATATTTTTG CCGAGCGCGG TATTAGCCCG GATCAACTGC CTACACTTGA GCCTGAAATG  TTACCGATGT CGCAAGCCTT GCCGGACAAT GATTTCTTTA TGGGCTTGAT TGACCAAAAC ATTCGTTCGT TTGTGCCGAA ATTGGCTGAC AACAGCACCG ACGTGCTTTA CCACCAAGTG  TGGTTGCGCC CTGATTTAAA CCCGCGCGAT CGCAATTTAA TCAGCGTAAC GGCATTGATT GCCCAAGGCT TATATGATTT CGTCACGGTT TACAGCCTAC GGGCAAAAGC AGTCGGTATC 
AGCAAAGAAG AAATGCAAGA ACTGCTTGCG CACCTTGCAT TCTACGCAGG CACACCGTAT ATCGTGCCGG CAATTCCACA TGTAGCAAAA GCCTACGAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCACACA AATCAGCATT AAGCCCTGAG CAAATTTACA GCGTGTCGCC AACCTTGGCA ACCTACACCA AAACGCTTAT TTCAGACGAT ATGTGGAACC GCCCCATTTT AAGCAAACAC  GATCGTGCAA TGATTACGGT GGCGGCACTG ATTGCCCGTC AGCAAACCAT GGGCATGAAA CATTATTTCA ATTTGGCGAT GGATTTAGGC GTAAGCGCAA AAGAAATGTC GGAAGTGGTA  TTGCACATGG CGTTTTACGC TGGCTGGTCA AACGCTTTTG CGGCGGTGGA TATTTTGAAA GATATTTTTG CCGAGCGCGG TATTAGCCCG GATCAACTGC CTACACTTGA GCCTGAAATG  TTACCGATGT CGCAAGCCTT GCCGGACAAT GATTTCTTTA TGGGCTTGAT TGACCAAAAC ATTCGTTCGT TTGTGCCGAA ATTGGCTGAC AACAGCACCG ACGTGCTTTA CCACCAAGTG  TGGTTGCGCC CTGATTTAAA CCCGCGCGAT CGCAATTTAA TCAGCGTAAC GGCATTGATT GCCCAAGGCT TATATGATTT CGTCACGGTT TACAGCCTAC GGGCAAAAGC AGTCGGTATC 
AGCAAAGAAG AAATGCAAGA ACTGCTTGCG CACCTTGCAT TCTACGCAGG CACACCGTAT ATCGTGCCGG CAATTCCACA TGTAGCAAAA GCCTACGAA 

Retrieve as FASTA