Entry information : PatCMD
Entry ID 4768
Creation 2007-02-23 (Filippo Passardi)
Last sequence changes 2016-01-22 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-01-25 (Christophe Dunand)
Peroxidase information: PatCMD
Name PatCMD
Class Carboxymuconolactone decarboxylase (peroxidase activity)    [Orthogroup: CMD001]
Taxonomy Bacteria Proteobacteria Gammaproteobacteria Pseudoalteromonadaceae Pseudoalteromonas
Organism Pseudoalteromonas atlantica    [TaxId: 288 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PatCMD
start..stop
S start..stop
HhCMD 113 5e-34 5..112 4..111
BUspCMD 88 3e-24 8..111 5..109
MacCMD02 86 2e-23 4..114 2..109
NwCMD 83 3e-22 5..113 3..111
Literature and cross-references PatCMD
Literature Copeland A. et al., US DOE Joint Genome Institute. Complete sequence of Pseudoalteromonas atlantica T6c. Unpublished

Protein ref. GenBank:   ABG41189.1 UniProtKB:   Q15SE9
DNA ref. GenBank:   CP000388 (3260762..3261124)
Protein sequence: PatCMD
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   120
PWM (Da):   %s   12739.46  
PI (pH):   %s   4.63
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MQPTDHINTY QKLQDLSAKL ISEIPETMAG FGELHVNAVA KGALDNKTKE LIALSIAISV RCNGCIAFHV HDALKAGANR QEIVETIGVA ILMGGGPSMV YGCEALEALD QFELNQDLPL 

Retrieve as FASTA  
Remarks Complete sequence from Genomic. Strain="T6c / BAA-1087".
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCAACCAA CTGATCACAT CAACACCTAT CAAAAGCTAC AAGATCTCAG TGCTAAACTA ATCTCTGAAA TCCCTGAGAC CATGGCGGGT TTCGGTGAAC TCCACGTAAA TGCTGTCGCC  AAAGGCGCTT TGGACAATAA AACCAAAGAG CTTATTGCAC TGAGTATTGC GATATCTGTA CGCTGCAATG GGTGTATCGC TTTTCACGTG CATGACGCTC TGAAAGCCGG TGCAAATAGA  CAAGAAATTG TAGAGACCAT AGGAGTAGCA ATATTAATGG GTGGTGGACC GTCTATGGTT TATGGTTGCG AAGCATTAGA AGCCTTAGAT CAATTCGAGC TAAATCAAGA CTTACCTTTG 
TAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCAACCAA CTGATCACAT CAACACCTAT CAAAAGCTAC AAGATCTCAG TGCTAAACTA ATCTCTGAAA TCCCTGAGAC CATGGCGGGT TTCGGTGAAC TCCACGTAAA TGCTGTCGCC  AAAGGCGCTT TGGACAATAA AACCAAAGAG CTTATTGCAC TGAGTATTGC GATATCTGTA CGCTGCAATG GGTGTATCGC TTTTCACGTG CATGACGCTC TGAAAGCCGG TGCAAATAGA  CAAGAAATTG TAGAGACCAT AGGAGTAGCA ATATTAATGG GTGGTGGACC GTCTATGGTT TATGGTTGCG AAGCATTAGA AGCCTTAGAT CAATTCGAGC TAAATCAAGA CTTACCTTTG 
TAA 

Retrieve as FASTA