Entry information : NwCMD
Entry ID 4771
Creation 2007-02-23 (Filippo Passardi)
Last sequence changes 2016-01-25 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-01-25 (Christophe Dunand)
Peroxidase information: NwCMD
Name NwCMD
Class Carboxymuconolactone decarboxylase (peroxidase activity)    [Orthogroup: CMD001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Bradyrhizobiaceae Nitrobacter
Organism Nitrobacter winogradskyi    [TaxId: 913 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value NwCMD
start..stop
S start..stop
BUspCMD 162 1e-53 1..107 1..107
CAspCMD 132 1e-41 1..113 18..130
HhCMD 98 4e-28 3..108 4..109
PatCMD 83 2e-22 3..111 5..113
Literature and cross-references NwCMD
Literature Starkenburg S.R. et al., Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255 Appl. Environ. Microbiol. 72 (3), 2050-2063 (2006)
Protein ref. GenBank:   ABA04719.1 UniProtKB:   Q3SSM2
DNA ref. GenBank:   CP000115.1 (1590960..1591304)
Protein sequence: NwCMD
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   114
PWM (Da):   %s   11647  
PI (pH):   %s   6.51
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MLDWANFRNK LSSRVGELRK LSPDTVDAYR MAGGAGAKTG HLDGKTRELI SLAVAVTTRC DGCIAVHAAK AVQEGATREE IAEALGVAVA MNAGAAVVFS ARVLDAVDAV EGAR 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Strain="Nb-255 / ATCC 25391".
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCTTGATT GGGCGAACTT TCGGAACAAG TTGTCGTCAC GCGTCGGCGA ACTGCGCAAA CTTTCACCCG ACACCGTCGA TGCCTATCGC ATGGCCGGCG GCGCGGGCGC CAAGACCGGG  CATCTCGATG GAAAAACGCG CGAGCTCATT TCGCTTGCCG TCGCGGTCAC GACGCGCTGC GACGGCTGTA TCGCCGTTCA CGCGGCGAAG GCGGTGCAGG AAGGTGCGAC GCGCGAAGAA 
ATCGCCGAGG CGCTGGGCGT TGCTGTGGCA ATGAACGCCG GGGCAGCCGT CGTCTTTTCC GCAAGAGTTC TCGACGCGGT GGATGCGGTC GAGGGCGCGC GATAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCTTGATT GGGCGAACTT TCGGAACAAG TTGTCGTCAC GCGTCGGCGA ACTGCGCAAA CTTTCACCCG ACACCGTCGA TGCCTATCGC ATGGCCGGCG GCGCGGGCGC CAAGACCGGG  CATCTCGATG GAAAAACGCG CGAGCTCATT TCGCTTGCCG TCGCGGTCAC GACGCGCTGC GACGGCTGTA TCGCCGTTCA CGCGGCGAAG GCGGTGCAGG AAGGTGCGAC GCGCGAAGAA 
ATCGCCGAGG CGCTGGGCGT TGCTGTGGCA ATGAACGCCG GGGCAGCCGT CGTCTTTTCC GCAAGAGTTC TCGACGCGGT GGATGCGGTC GAGGGCGCGC GATAG 

Retrieve as FASTA