Entry information : HhCMD
Entry ID 4778
Creation 2007-02-23 (Filippo Passardi)
Last sequence changes 2016-01-25 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-01-25 (Christophe Dunand)
Peroxidase information: HhCMD
Name HhCMD
Class Carboxymuconolactone decarboxylase (peroxidase activity)    [Orthogroup: CMD001]
Taxonomy Bacteria Proteobacteria Gammaproteobacteria Ectothiorhodospiraceae Halorhodospira
Organism Halorhodospira halophila    [TaxId: 1053 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HhCMD
start..stop
S start..stop
PatCMD 113 5e-34 4..111 5..112
BUspCMD 101 1e-29 4..110 3..109
NwCMD 98 4e-28 4..109 3..108
MacCMD03 85 5e-23 11..111 6..107
Literature and cross-references HhCMD
Literature Copeland A. et al., US DOE Joint Genome Institute. Complete sequence of Halorhodospira halophila SL1. Unpublished

Protein ref. GenBank:   ABM60869.1 UniProtKB:   A1WT57
DNA ref. GenBank:   CP000544.1 (88297..88644)
Protein sequence: HhCMD
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   115
PWM (Da):   %s   11965.01  
PI (pH):   %s   5.69
Sequence
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Send to Peroxiscan
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MYKDWASTAD ELSTLFKEVR KGQPDVAKGF SAIAQAATAD GALSPKTKEL IAVAISVATR CDGCIAFHTK AAVKHGATRD EILEMIGVSV YMGGGPSLTY GAQALEAYDQ FAAQG 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Strain="DSM 244 / SL1".
DNA
Send to BLAST
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ATGTACAAGG ATTGGGCCAG CACCGCGGAC GAGCTCTCTA CCCTCTTCAA AGAGGTCCGC AAGGGGCAGC CGGATGTCGC CAAAGGATTC TCGGCCATCG CCCAGGCGGC CACCGCCGAC  GGCGCCCTGT CGCCGAAGAC CAAGGAGCTG ATCGCGGTGG CCATCAGCGT GGCAACCCGC TGTGACGGCT GTATCGCCTT CCACACCAAG GCGGCGGTCA AGCACGGCGC CACCCGCGAC 
GAGATCCTCG AGATGATCGG CGTTTCGGTC TATATGGGCG GCGGCCCGTC GCTCACCTAC GGCGCCCAGG CGCTTGAGGC CTACGACCAG TTTGCCGCCC AGGGTTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTACAAGG ATTGGGCCAG CACCGCGGAC GAGCTCTCTA CCCTCTTCAA AGAGGTCCGC AAGGGGCAGC CGGATGTCGC CAAAGGATTC TCGGCCATCG CCCAGGCGGC CACCGCCGAC  GGCGCCCTGT CGCCGAAGAC CAAGGAGCTG ATCGCGGTGG CCATCAGCGT GGCAACCCGC TGTGACGGCT GTATCGCCTT CCACACCAAG GCGGCGGTCA AGCACGGCGC CACCCGCGAC 
GAGATCCTCG AGATGATCGG CGTTTCGGTC TATATGGGCG GCGGCCCGTC GCTCACCTAC GGCGCCCAGG CGCTTGAGGC CTACGACCAG TTTGCCGCCC AGGGTTAG 

Retrieve as FASTA