Entry information : VfDiHCcP (yhjA)
Entry ID 5089
Creation 2007-03-27 (Filippo Passardi)
Last sequence changes 2007-03-27 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2010-04-20 (Christophe Dunand)
Peroxidase information: VfDiHCcP (yhjA)
Name (synonym) VfDiHCcP (yhjA)
Class Di-haem cytochrome C peroxidase    [Orthogroup: DiHCcP001]
Taxonomy Bacteria Proteobacteria Gammaproteobacteria Vibrionaceae Aliivibrio
Organism Vibrio fischeri    [TaxId: 668 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VfDiHCcP
start..stop
S start..stop
ZmomDiHCcP 487 1e-170 4..460 7..467
AsuDiHCcP 451 8e-157 1..460 1..461
HdDiHCcP 445 1e-154 1..461 1..461
GoDiHCcP 422 8e-145 2..457 9..469
Literature and cross-references VfDiHCcP (yhjA)
Literature Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005).
Protein ref. UniProtKB:   Q5E346
DNA ref. GenBank:   CP000020.2 (2288079..2286694)
Protein sequence: VfDiHCcP (yhjA)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   461
PWM (Da):   %s   50516.73 Transmb domain:   %s   i5-22o
PI (pH):   %s   4.95
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MKKIGLVVGL GVVAYLGTVY IVDSSDEALS QRKLAQAQIK DDPISSAAFK VLTENGCGYC HTENSEMPFY ANFPIAKQIM QKDVESGLRH FQFDDVLNSF QVGNEVSDVA LAKISGVLND  ESMPPKAYLS MHWRSSLSNE EKHTLRAWIK QEQKNKHSLA SSEYKYEAVQ PINAHVTVDE QKVALGDALY HDKRLSGDNT VACSSCHSLS TGGVDRLTTS TGINGSKGPI NAPTVFNSSY  NIHQFWDGRA NDLQEQAGGP PMNPIEMGSA SWEQITGKLE LDEEMKATFA KIYPDGITGE NITDAIAEFE KTLITPNSRF DQFLKGDALA LNEQEQHGYE LFKQNKCSTC HAGQAMGGQT 
FEVMGLKADY FGERGNVSEV DNGRFNVTSK AHDMNRFKVP TLRNIALTAP YFHDGSAETL DDAVAAMAQY QVGVTLSKSE VEDISAYLKT LTGEYKGEML N 

Retrieve as FASTA  
Remarks Complete sequence from Genomic (chromo 1). Strain="ATCC 700601 / ES114". Unusually long DiHCcP (START codon is 100 a.a. earlier than usual). Note that the long 5' fragment includes a third CxxCH heme-binding motif. High similarity with other DiHCcP, but no "critical" histidine residue after the first CxxCH motif (see Wang Y. et al. (2003), Biochemistry, pp.7318-7325 and Dias J.M. et al. (2004), Structure, pp.961-973): does this protein still have peroxidase activity?