Entry information : VvPrxII05 (VvPrxIIE)
Entry ID 5130
Creation 2007-04-06 (Christophe Dunand)
Last sequence changes 2011-11-25 (Qiang LI)
Sequence status complete
Reviewer Marcel Zamocky
Last annotation changes 2011-11-25 (Qiang LI)
Peroxidase information: VvPrxII05 (VvPrxIIE)
Name (synonym) VvPrxII05 (VvPrxIIE)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue types Berries
Buds
Inflorescences
Leaves
Roots
Seeds
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvPrxII05
start..stop
S start..stop
HaPrxII01 314 1e-110 1..210 1..204
PtPrxII05 311 3e-109 1..212 1..218
PtrtrPrxII05 308 5e-108 1..212 1..218
PtremPrxII05 308 6e-108 1..212 1..218
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17991901..17992539 639  
join(17991901..17992539)


exon

Literature and cross-references VvPrxII05 (VvPrxIIE)
Literature REFERENCE 1 Velasco,R., et al., The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome.
REFERENCE 2 Reid,K.E., Liao,N., Peng,F., Schlosser,J., Kirkpatrick,R., Shukin ,R., Barber,S., Holt,R., Siddiqui,A., Jones,S., Marra,M., Bowen,P., Bohlmann,J., Martinez Zapater,J.M. and Lund,S.T. Expressed sequence tags from grapevine (Vitis vinifera cv. Cabernet Sauvignon)
DNA ref. Phytozome 11:   chr8 (17991901..17992539)
Cluster/Prediction ref. UniGene:   Vvi.11050
Protein sequence: VvPrxII05 (VvPrxIIE)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   212
PWM (Da):   %s   22383.73  
PI (pH):   %s   8.05
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATTLTMARL LSSAKSLSFS SSASALFPPA SLSLKLRHPK PLRFSTAISA TIAVGDKLPE STFSYFDSAG ELQTTTVSDL TKGKKAILFA VPGAFTPTCS QKHLPGFVEK SGELKSKGVE 
TIACISVNDA FVMKAWKADL KIEDQVLLLS DGNGDFTKAI GCELDLSDKP VGLGVRSRRY AMLVDDGVVK VLNLEEGGAF TFSGAEDILK LL 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, intronless) and 52 ESTs. Cultivar="Pinot Noir", "Cabernet Sauvignon", "PN40024" and "Muscat Hamburg".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAACCA CCCTAACAAT GGCCAGGCTT CTCTCTTCCG CCAAATCCCT TTCTTTCTCT TCTTCCGCAT CTGCCCTTTT CCCACCCGCT TCCCTCTCCC TCAAACTCCG CCACCCTAAG  CCCCTCAGAT TCTCCACCGC CATCTCCGCT ACCATCGCCG TCGGTGACAA GCTCCCAGAA TCCACCTTCT CCTACTTCGA CTCCGCCGGC GAGCTCCAGA CCACCACCGT CTCCGACCTC  ACCAAGGGCA AGAAAGCCAT CCTCTTTGCC GTCCCCGGCG CCTTCACCCC CACTTGCTCC CAGAAACACC TCCCCGGCTT CGTTGAAAAG TCCGGCGAGC TCAAGTCAAA AGGGGTCGAA  ACCATCGCCT GCATCTCCGT CAACGACGCC TTCGTCATGA AGGCTTGGAA GGCCGACTTG AAGATCGAGG ACCAAGTGCT CCTGTTGTCG GATGGAAATG GGGACTTCAC CAAAGCTATT  GGGTGCGAGC TCGATCTCAG CGACAAGCCT GTGGGTCTGG GAGTGAGGTC GAGGCGTTAC GCCATGTTGG TGGACGATGG AGTTGTCAAG GTCTTGAATT TGGAGGAGGG CGGTGCGTTT 
ACGTTCAGTG GCGCCGAGGA TATCCTCAAA CTTCTCTGA 

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CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAACCA CCCTAACAAT GGCCAGGCTT CTCTCTTCCG CCAAATCCCT TTCTTTCTCT TCTTCCGCAT CTGCCCTTTT CCCACCCGCT TCCCTCTCCC TCAAACTCCG CCACCCTAAG  CCCCTCAGAT TCTCCACCGC CATCTCCGCT ACCATCGCCG TCGGTGACAA GCTCCCAGAA TCCACCTTCT CCTACTTCGA CTCCGCCGGC GAGCTCCAGA CCACCACCGT CTCCGACCTC  ACCAAGGGCA AGAAAGCCAT CCTCTTTGCC GTCCCCGGCG CCTTCACCCC CACTTGCTCC CAGAAACACC TCCCCGGCTT CGTTGAAAAG TCCGGCGAGC TCAAGTCAAA AGGGGTCGAA  ACCATCGCCT GCATCTCCGT CAACGACGCC TTCGTCATGA AGGCTTGGAA GGCCGACTTG AAGATCGAGG ACCAAGTGCT CCTGTTGTCG GATGGAAATG GGGACTTCAC CAAAGCTATT  GGGTGCGAGC TCGATCTCAG CGACAAGCCT GTGGGTCTGG GAGTGAGGTC GAGGCGTTAC GCCATGTTGG TGGACGATGG AGTTGTCAAG GTCTTGAATT TGGAGGAGGG CGGTGCGTTT 
ACGTTCAGTG GCGCCGAGGA TATCCTCAAA CTTCTCTGA 

Retrieve as FASTA