Entry information : MtAPx[P]03 ( Medtr5g008440.1[4.0] / Medtr5g008440.1[3.5] / Medtr5g008500.1[3.0])
Entry ID 5133
Creation 2007-04-06 (Christophe Dunand)
Last sequence changes 2015-02-05 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Catherine Mathe
Last annotation changes 2016-05-03 (Catherine Mathe)
Peroxidase information: MtAPx[P]03 ( Medtr5g008440.1[4.0] / Medtr5g008440.1[3.5] / Medtr5g008500.1[3.0])
Name (synonym) MtAPx[P]03 ( Medtr5g008440.1[4.0] / Medtr5g008440.1[3.5] / Medtr5g008500.1[3.0])
Class Ascorbate peroxidase     [Orthogroup: APx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation Cytosolic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtAPx[P]03
start..stop
S start..stop
MtAPx01 312 2e-109 36..206 80..250
CarAPx01 302 2e-106 36..206 7..177
GmAPx01 301 3e-105 3..206 51..250
PsAPx01 301 4e-105 36..206 80..250
Literature and cross-references MtAPx[P]03 ( Medtr5g008440.1[4.0] / Medtr5g008440.1[3.5] / Medtr5g008500.1[3.0])
Literature Debelle,F., Samain,S., Fouteau,S., Zuber,A., Dudez,A., Gouzy,J., Segurens,B., Wincker,P., Couloux,A., Scarpelli,C., Quetier,F. and
Weissenbach,J. Medicago truncatula chromosome 5 sequencing
DNA ref. Phytozome 12:   MtChr5 (1607069..1606284)
Cluster/Prediction ref. Phytozome Gene 12:   31086206 [Incorrect prediction]
Protein sequence: MtAPx[P]03 ( Medtr5g008440.1[4.0] / Medtr5g008440.1[3.5] / Medtr5g008500.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   206
PWM (Da):   %s   22736.75  
PI (pH):   %s   4.72
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MQTQTPALNA SRKKLVELIE TSRNVWLIFH WKSKVILEPL KEQFLIISYV DFYQLSGVVA VEITGGPEVP FHPGGEDKPE PPLEGRLPDA TEGSNHLRDV FGKSMGLSDQ DIVALSGxHT 
IGAAHKERSG FEGPWTSNPL IFDNSYFTKL LGGEKEGLLQ LPSDKALLSD LVFRLLVEKY VADEDAFFAD YVEARQKLFE LGFAEA 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, no intron), incorrect prediction. Frame shift between VALS and HTIG. No EST. Probably a pseudogene.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCAAACTC AAACCCCGGC GCTGAATGCG TCAAGGAAAA AGTAACAAAA AAAAAGTATT AAAAAAATGT AATGATTAAA AGAAAGAGAA TAGTAACTTT ATCAAATTAT CTCTATATTT  TTACTACTAT TATAAATGTA AGGTAAAAAT AATATTTTAT TAGAGATCAA TCATTTGATA CTTACTAGGA AATAATTGAA GCGGTAGGTT GGTTGAATTG ATCGAAACTT CTAGAAATGT  GTGGTTAATA TTTCATTGGA AATCAAAAGT CATTTTGGAG CCTCTTAAGG AGCAATTCCT AATCATTAGC TATGTTGATT TCTATCAGTT GTCTGGTGTT GTTGCTGTTG AGATTACTGG  TGGACCTGAA GTTCCTTTCC ACCCCGGCGG GGAGGACAAG CCTGAGCCAC CATTAGAGGG TCGCTTGCCT GATGCTACCG AGGGTTCCAA CCATTTGAGG GATGTGTTTG GCAAATCTAT  GGGGCTTAGT GACCAGGACA TCGTTGCTTT GTCTGGTACn CACACCATTG GAGCTGCACA CAAGGAGCGT TCTGGATTTG AGGGCCCATG GACTTCTAAT CCTCTCATTT TTGACAACTC  ATATTTCACG AAGTTGTTGG GTGGTGAGAA GGAAGGCCTT CTTCAGTTGC CAAGTGATAA GGCACTTTTG AGCGACCTTG TATTTCGCCT ACTTGTTGAG AAATATGTTG CCGATGAAGA 
TGCTTTCTTT GCTGATTATG TCGAGGCTCG TCAAAAGCTC TTTGAGCTTG GGTTTGCAGA AGCCTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCAAACTC AAACCCCGGC GCTGAATGCG TCAAGGAAAA AGTTGGTTGA ATTGATCGAA ACTTCTAGAA ATGTGTGGTT AATATTTCAT TGGAAATCAA AAGTCATTTT GGAGCCTCTT  AAGGAGCAAT TCCTAATCAT TAGCTATGTT GATTTCTATC AGTTGTCTGG TGTTGTTGCT GTTGAGATTA CTGGTGGACC TGAAGTTCCT TTCCACCCCG GCGGGGAGGA CAAGCCTGAG  CCACCATTAG AGGGTCGCTT GCCTGATGCT ACCGAGGGTT CCAACCATTT GAGGGATGTG TTTGGCAAAT CTATGGGGCT TAGTGACCAG GACATCGTTG CTTTGTCTGG TACnCACACC  ATTGGAGCTG CACACAAGGA GCGTTCTGGA TTTGAGGGCC CATGGACTTC TAATCCTCTC ATTTTTGACA ACTCATATTT CACGAAGTTG TTGGGTGGTG AGAAGGAAGG CCTTCTTCAG  TTGCCAAGTG ATAAGGCACT TTTGAGCGAC CTTGTATTTC GCCTACTTGT TGAGAAATAT GTTGCCGATG AAGATGCTTT CTTTGCTGAT TATGTCGAGG CTCGTCAAAA GCTCTTTGAG 
CTTGGGTTTG CAGAAGCCTA A 

Retrieve as FASTA