Entry information : PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
Entry ID 5158
Creation 2007-04-08 (Christophe Dunand)
Last sequence changes 2010-07-08 (Marie Brette (Scipio))
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
Name (synonym) PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
Class Alpha-dioxygenase    [Orthogroup: DiOx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue types Buds
Leaves
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtDiOx01
start..stop
S start..stop
VvDiOx02 1083 0 11..641 7..637
CclDiOx02 1083 0 6..642 2..639
NatDiOx01 1040 0 8..641 8..641
VvDiOx01 1040 0 1..641 1..641
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6633262..6633381 120 N° 2 6633466..6633729 264 N° 3 6633980..6634129 150 N° 4 6634232..6634365 134
N° 5 6634950..6635163 214 N° 6 6635282..6635427 146 N° 7 6635551..6635778 228 N° 8 6636481..6636683 203
N° 9 6636997..6637240 244 N° 10 6637692..6637917 226  
join(6633262..6633381,6633466..6633729,6633980..6634129,6634232..6634365,6634950 ..6635163,6635282..6635427,6635551..6635778,6636481..6636683,6636997..6637240,66 37692..6637917)


exon

Literature and cross-references PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
Literature REFERENCE 1; DOE Joint Genome Institute and Stanford Human Genome Center. Direct Submission.
REFERENCE 2; Ralph,S. et al:, Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006).
Protein ref. UniProtKB:   A9PFX6 [Fragment]
DNA ref. Phytozome 11:   scaffold_8 (6633262..6637917)
mRNA ref. GenBank:   EF147254 [Fragment]
Cluster/Prediction ref. UniGene:   Pth.9070
Omic ref. ePlant:   Potri.008G106400
Protein sequence: PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   642
PWM (Da):   %s   72962.71  
PI (pH):   %s   7.28
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MIRLTELIKKLSSASLRRFIHQDFHEVVDRMTIIDAFLFLIVHSIDKLGIWHRLPVFLGLLYLSVRRHLHQEYSLFNVGRSPTGVRYNPADYPYRTADGKYNEPFNEGAGSQGTFFGRNVLPVNQQDKLKKPDPMVVATRLLARKKFIDTGKQFNMIAASWIQFMIHDWVDHMEETAQIELVAPKEVANQCPLKSFRFYKTKEVPTGFWDIKSGALNIRTPWWDGSAIYGSNEKRLHKVRTFKDGKLKISEDGLLLHDQDGIAVSGDVRNSWAGVSILQALFVKEHNAVCDTLREYKDLGDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLLAGMRGNWYGLLGKNFKDKFGHVGGAILGGVVGLKKPENHGVPYSLTEEFVSVYRMHSLLPDHLQLRDISAAPDSHKSPPSTDKIPMPSLIGRGGEKTLSGIGFIKLMVSMGHQASGALEPWNYPMWLRDVVAQEVDGTDRPDHVDLAALVYRDRERNVARYNEFRRALLLIPISKWEDVTDDQEVIEALHQVYGDEVEELDLLVGLMAEKKIKGFAISETAFIIFLIMATRRLEADRFFTSNFNEETYTKKGFEWVNSTESLKDVLDRHYPEMTAKWMNSASAFSVWDSPPPSPNPIPLLFRVPK

Retrieve as FASTA  
Remarks Complete sequence from genomic (9 introns), 1 mRNA and 6 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATTCGGCTAACAGAGCTGATAAAAAAATTATCAAGTGCATCTCTCCGTCGTTTCATCCACCAAGACTTCCATGAAGTTGTTGATAGGATGACCATTATTGATGCTTTTCTTTTCCTG
GTAAAACCCTGCTCCTCCTCTCTATAGATAATTTATTAATCCATATATGATGTAAATATTAGTATTTACGTTTTATACGTGCAGATTGTGCACTCCATTGATAAGCTGGGGATATGGCAT
CGGTTGCCTGTATTCTTAGGCCTGCTTTATTTGTCTGTACGGAGGCACCTTCACCAGGAGTACAGCTTGTTCAATGTTGGGAGATCCCCTACCGGAGTTCGCTATAACCCAGCAGATTAT
CCGTATAGAACAGCCGATGGAAAATATAACGAGCCCTTCAACGAGGGTGCAGGAAGCCAAGGAACTTTCTTTGGAAGAAACGTTCTCCCAGTAAATCAACAAGATAAG
GTACGGATACAT
ATATGTGTTCCTCATGATTTCCCCTAAGAAATGGTAATGACAATTATAATTATTATTTTTAATTAAATGATCCCGACTTTAGATTTATAAATTTTAATTCAAAGATATTCCAGTAAAAGA
GATATTGTAAAAAGCAGAAAAATATAATAATAACAATAAATTTTCTTCAAGAAGACGTTAATTTTTATTTTTTTTATGAATTAACAATATAAGATTTATCTATATTTTATATATGTAGCT
AAAGAAGCCAGACCCTATGGTCGTTGCCACAAGACTACTAGCTCGGAAAAAATTTATAGACACAGGAAAGCAATTCAACATGATAGCAGCTTCATGGATTCAGTTTATGATACATGACTG
GGTTGATCACATGGAAGAAACTGCGCAG
GTACGGCCTCATGAGAGTTTATAATATGTTTTTTTTTTAATCAAATTAAAGATCAGATATTTGACTTTTTCTTCTGTACCAATTATAACTAA
ATATTTGCAGATTGAGCTTGTTGCACCAAAGGAAGTTGCAAATCAATGCCCACTTAAATCTTTCAGGTTTTACAAGACGAAGGAAGTCCCCACTGGATTCTGGGATATCAAGAGTGGAGC
GTTGAATATTCGTACACCTTGGTG
GTATTTTTCGATGCTTAAGTGAAAACAGCTTAATCAAAAGGATTTCAAAACTTTACTAATTTTAATGGGTTCAGTAAATAAAAACCACAGTGGACA
CATGAGTGAGCTCGCTCCATTTAGATTTCCACATTCTGAGATCCTAAAATGCTCTTTGTCTTCTATTTCTTGAAAATAGGGTATTTAAGAGACATTTAATTTCATTTCTTTGGAAGATAT
ATAAAATCTTAAAAACAATTAATTTGGGAAGAAAACGATGCAAATACAAGCGCAATATATATTGCAATTTATAGGAATTTTGCACAATCGTTTCCATGAAAACATCCATAGAGTTTATTA
TATATACATACACAAATCGCAGTGTATTTTTCAAATATTATTTTTTTACTCCTTGAGGTCCCCACAAAAGAAAAAACACCCACAAACAAACACATGTTTATTGCACGAGAAACACTAAAT
TCCATATCTAACAAGAATTTCATCATAGAACAAATCTCATTCTAGATAGCAGCGGTCACAATATTTTTCAAAATAGTAGGTCCAAAAAAAAAAGAACTTGATACATTCTAAGAAATTAAT
ACGTGCAGGGATGGAAGTGCTATATACGGGAGCAATGAAAAAAGGCTGCATAAGGTTAGAACTTTCAAAGATGGGAAGCTCAAGATATCTGAAGACGGCCTTCTCCTTCATGACCAAGAT
GGGATTGCTGTTTCAGGAGATGTTCGCAATAGTTGGGCAGGTGTTTCCATTTTGCAAGCCCTCTTCGTTAAAGAGCATAACGCAGTTTGTGACACCCTCAAG
GTTTGTGTGTGTGTGTTT
TTATCACATTCGTAAGAAATACGCTGTTGCATTAATTTCATTTCTTGAAATTAAATGTTAATCCATAGATTAACTGATTTTATACGCTGCATATGTTTAGAGGGAATATAAGGACTTGGG
AGACGAAGAGCTATACCGGCATGCAAGGCTAGTGACTTCTGCAGTAATTGCAAAAGTTCATACAATTGATTGGACTGTTGAACTTCTCAAAACTGATACACTATTAGCAGGGATGCGAGG
CAATTG
GTATGTGAACCTCCAGCTCCGATAACATGGGTTGCTATGTACTATCTGTACATGATCATAACAGCGAATTAATATTGGCCATGATCCAAATTTAATTTATTGTCCTTCGTTTCT
GTTTTTTAGGTATGGGTTGTTGGGGAAAAACTTCAAGGACAAGTTTGGTCATGTTGGAGGAGCTATCTTGGGAGGTGTTGTGGGGCTTAAGAAGCCTGAAAACCATGGTGTCCCATATTC
ATTAACTGAGGAGTTTGTCTCTGTTTACAGAATGCACTCACTTCTCCCTGATCACCTTCAGCTTAGAGACATATCAGCTGCACCGGACTCTCACAAATCTCCGCCTTCAACTGACAA
GTA
AAATTCAAGTTGCCTTTTATTTTGATAAAATGGATTGGACATCCCTTTCCTCTTTCTTTCTTTCTTTCTTTCTTTTCAAAAAATATATAAATAGATAAAATACTTTAAAGTTATTTAAGG
AAAGCATGCTGATTATAAAAGAAGCAGGAGCAAAAGCACTCTCCTATAATTAACTTTTACTACTCTTTTTGAAATTAGATGCACACATACATACATACATACATACATTGTATAATACAT
ACATACATACATACATGCATACATACATATATGTATGTATGTATCTATGTATGTATGTGTGCATCTTATCTCAAAAAGAGTAGTAAAAGTTAATTGTATGTATGTATGTATGTATGTATG
TATGTATACATTATACAATGTATGTATGTATGCATGTATGTATGTATGTTTTCTTCAAAAGACAAGTTCTTTATCCCTTGTACTCTTATTAAAAGCTGCTAATTTATAAGCAAAACACAG
CTCAATAGATTCTTGATCTCACCATTCTTGTTTTACAAAAAAGCATTGCCTATTTTGATAACTTCATGCATTGACCATTCTTTCTTGGTTAGACTAATAAGAACGCTAGTCAACGTAATT
ATAATGTATCTTAGACATTGTTAATTAGTGTATTTAAAAAGAAGGAAGATAAATATGGAGAAAGTTCTGTTGTTGTTGATTTCGTGCATGCACGCGCAGGATACCTATGCCAAGTTTGAT
AGGTCGTGGAGGAGAAAAAACATTATCTGGAATTGGATTTATCAAACTTATGGTTTCAATGGGCCACCAAGCTTCTGGGGCATTGGAACCATGGAATTATCCCATGTGGCTCAGGGACGT
CGTAGCACAGGAAGTTGATGGTACGGACCGGCCTGATCATGTAGACCTTGCCGCTCTTGAAG
GTAACGCTAGCCATTCATATGATCGTATTGTGAATATAGAAACTATTCAAAATTGAAG
ATTTGATGGAATTATTCCAAGTTTAAGAAATTTTTCTTGTTCTTTTACAGTCAACTCCTTTGACATTAAAAGTATTTTTGGGTACAAAAAGTTACATAGTATTTTGAAAAAATGAATGCT
TTTTATAATCTTATGATTCTTCAGGAAGTCATTGTAAATATTTACATTTGTATTAATACGCCTAACGCATGCAAATAACGTGGAGCTAATGCACATATATTTTGTTTGATCAAATATGAA
TAAATCGTCGCACAGTTTACCGGGACAGGGAGAGGAATGTTGCGAGGTACAATGAGTTTCGTAGGGCTCTACTACTGATACCCATCTCAAAATGGGAAGATGTAACGGATGATCAGGAGG
TGATAGAAGCTCTTCATCAAGTCTACGGTGATGAAGTGGAAGAGCTCGATCTTCTAGTGGGACTCATGGCAGAGAAGAAAATTAAAGGATTTGCAATTAGCGAGACTGCTTTTATTATAT
TCCTTATCATGGCAACCAG
GTAAATATTTTTTATTTGTCGTAAGATGCGTGCATGGTGACCAATATAACCCCACTTCCTCTTATTAAATTCGTAATATAAAATCGGTCGAAATTGAGAGA
CTTGTCTTTGCCGCCGCCCCCTGAAAAAACTATTTCTTCAACAACTGCCCGCTATGCCATGTGGATTAATAAAAAAAGAGAGGGTGGGAAAGAGCACACCTAACTATAGTCACCTGGTAG
TTGGTACTAGACGGAACATGTTAATTAAGAGATTTTCCAGGTGATGCTAATTCATGTCCGAATATTTCAACCTCTGGAAAAATTATTGCAAAAGTTTTTATACATGTAATTTATAAGTAG
AAGTTACCTTTTTCCATAAAACAATATATCAATCACTTGTTATTATAATTCCTATGATCCAACATATATATCATGAGTTTTGATGACCCGAGGGATTAATGGACATGCAGGAGGTTAGAG
GCAGATAGGTTCTTCACAAGCAATTTCAACGAGGAAACATACACGAAGAAAGGATTTGAATGGGTGAATTCAACAGAGAGTCTGAAAGATGTCCTTGATCGTCATTATCCAGAAATGACT
GCAAAATGGATGAACTCAGCAAGTGCTTTCTCTGTTTGGGACTCGCCTCCACCTTCTCCCAATCCCATTCCTCTTCTTTTTCGAGTTCCGAAGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATTCGGCTAACAGAGCTGATAAAAAAATTATCAAGTGCATCTCTCCGTCGTTTCATCCACCAAGACTTCCATGAAGTTGTTGATAGGATGACCATTATTGATGCTTTTCTTTTCCTG
ATTGTGCACTCCATTGATAAGCTGGGGATATGGCATCGGTTGCCTGTATTCTTAGGCCTGCTTTATTTGTCTGTACGGAGGCACCTTCACCAGGAGTACAGCTTGTTCAATGTTGGGAGA
TCCCCTACCGGAGTTCGCTATAACCCAGCAGATTATCCGTATAGAACAGCCGATGGAAAATATAACGAGCCCTTCAACGAGGGTGCAGGAAGCCAAGGAACTTTCTTTGGAAGAAACGTT
CTCCCAGTAAATCAACAAGATAAG
CTAAAGAAGCCAGACCCTATGGTCGTTGCCACAAGACTACTAGCTCGGAAAAAATTTATAGACACAGGAAAGCAATTCAACATGATAGCAGCTTCA
TGGATTCAGTTTATGATACATGACTGGGTTGATCACATGGAAGAAACTGCGCAG
ATTGAGCTTGTTGCACCAAAGGAAGTTGCAAATCAATGCCCACTTAAATCTTTCAGGTTTTACAAG
ACGAAGGAAGTCCCCACTGGATTCTGGGATATCAAGAGTGGAGCGTTGAATATTCGTACACCTTGGTG
GGATGGAAGTGCTATATACGGGAGCAATGAAAAAAGGCTGCATAAGGTTAGA
ACTTTCAAAGATGGGAAGCTCAAGATATCTGAAGACGGCCTTCTCCTTCATGACCAAGATGGGATTGCTGTTTCAGGAGATGTTCGCAATAGTTGGGCAGGTGTTTCCATTTTGCAAGCC
CTCTTCGTTAAAGAGCATAACGCAGTTTGTGACACCCTCAAG
AGGGAATATAAGGACTTGGGAGACGAAGAGCTATACCGGCATGCAAGGCTAGTGACTTCTGCAGTAATTGCAAAAGTT
CATACAATTGATTGGACTGTTGAACTTCTCAAAACTGATACACTATTAGCAGGGATGCGAGGCAATTG
GTATGGGTTGTTGGGGAAAAACTTCAAGGACAAGTTTGGTCATGTTGGAGGA
GCTATCTTGGGAGGTGTTGTGGGGCTTAAGAAGCCTGAAAACCATGGTGTCCCATATTCATTAACTGAGGAGTTTGTCTCTGTTTACAGAATGCACTCACTTCTCCCTGATCACCTTCAG
CTTAGAGACATATCAGCTGCACCGGACTCTCACAAATCTCCGCCTTCAACTGACAA
GATACCTATGCCAAGTTTGATAGGTCGTGGAGGAGAAAAAACATTATCTGGAATTGGATTTATC
AAACTTATGGTTTCAATGGGCCACCAAGCTTCTGGGGCATTGGAACCATGGAATTATCCCATGTGGCTCAGGGACGTCGTAGCACAGGAAGTTGATGGTACGGACCGGCCTGATCATGTA
GACCTTGCCGCTCTTGAAG
TTTACCGGGACAGGGAGAGGAATGTTGCGAGGTACAATGAGTTTCGTAGGGCTCTACTACTGATACCCATCTCAAAATGGGAAGATGTAACGGATGATCAG
GAGGTGATAGAAGCTCTTCATCAAGTCTACGGTGATGAAGTGGAAGAGCTCGATCTTCTAGTGGGACTCATGGCAGAGAAGAAAATTAAAGGATTTGCAATTAGCGAGACTGCTTTTATT
ATATTCCTTATCATGGCAACCAG
GAGGTTAGAGGCAGATAGGTTCTTCACAAGCAATTTCAACGAGGAAACATACACGAAGAAAGGATTTGAATGGGTGAATTCAACAGAGAGTCTGAAA
GATGTCCTTGATCGTCATTATCCAGAAATGACTGCAAAATGGATGAACTCAGCAAGTGCTTTCTCTGTTTGGGACTCGCCTCCACCTTCTCCCAATCCCATTCCTCTTCTTTTTCGAGTT
CCGAAGTGA

Retrieve as FASTA