Entry information : BnAPx-R-1_other
Entry ID 5181
Creation 2007-08-21 (Christophe Dunand)
Last sequence changes 2011-04-18 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-04-18 (Christophe Dunand)
Peroxidase information: BnAPx-R-1_other
Name BnAPx-R-1_other
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnAPx-R-1_other
start..stop
S start..stop
BoAPx-R-1Ca_other 672 0 1..325 1..325
BrAPx-R-1Aa_other 645 0 2..325 3..327
AlyAPx-R 568 0 1..325 1..329
AtAPx-R 561 0 1..325 1..329
Literature and cross-references BnAPx-R-1_other
Literature Georges,F. Gene expression at early stages of B. napus seed development as revealed by transcript profiling under normal and abiotic stress conditions
EST ref. GenBank:   CN729137 [5' end]   EV107496 [3' end]
Protein sequence: BnAPx-R-1_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325
PWM (Da):   %s   35791.16  
PI (pH):   %s   8.36
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MTTTTASLFS RCHSSSLNFK CELESPAKTR LFSPATGKHV VRSLKAWRVR CSSDDPGSRH VYVSSRRNMV VMLSTVQLLS HLLPPDGKAA DMYPLMKDEI RRVVTKGKAA GVLRLVFHDA  GTFELDDNTG GINGSIVYEL ERPENGGLKR SLKVLEKAKI KVDEVQPVSW ADMIAVGGSE AVSMCGGPTI PVVLGRLDSM QPDPEDKLPP ESLNASGLKE CFQRKGFSTQ ELVALSGAHT 
IGSKGFGDPF TFDNAYYKIL LEKPWRSTTS KMTSMVGLPS DHALVEDDEC LRWVKEYAED QDKFFRDFTN AYIKLVNSGA KWKTL 

Retrieve as FASTA  
Remarks Complete sequence from 3 ESTs (GT083493.1). Cultivar="DH12075 (double haploid line from Cresor x Westar cross)"
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GACCGTTAAA GATGACGACG ACGACTGCGT CTCTGTTTTC ACGGTGCCAC TCTTCTTCTT TAAACTTCAA ATGCGAACTC GAATCTCCCG CGAAAACACG ACTCTTCTCT CCTGCGACAG  GGAAACACGT TGTTAGATCG TTAAAAGCAT GGCGTGTCCG TTGCTCCTCC GATGATCCTG GTTCGCGTCA TGTATACGTC TCCAGTAGAA GAAACATGGT TGTAATGTTG TCCACTGTAC  AGCTTCTGTC TCATTTGCTT CCGCCAGATG GAAAAGCAGC TGACATGTAT CCACTGATGA AAGATGAGAT AAGGAGAGTG GTGACGAAGG GTAAAGCTGC TGGTGTGCTT CGTTTAGTGT  TTCATGATGC TGGAACCTTT GAACTCGATG ATAACACAGG TGGCATCAAT GGGTCTATTG TTTATGAACT AGAGAGACCT GAAAACGGAG GTTTGAAGAG ATCCCTTAAG GTTCTAGAGA  AAGCAAAGAT TAAGGTTGAT GAGGTACAAC CAGTGTCTTG GGCGGATATG ATCGCTGTCG GTGGCTCTGA AGCAGTCTCA ATGTGCGGCG GCCCAACGAT TCCAGTAGTC TTAGGAAGAC  TTGATTCAAT GCAACCTGAT CCAGAAGACA AGTTACCTCC AGAATCCCTC AATGCGTCGG GTTTAAAAGA ATGTTTCCAA AGAAAAGGAT TCTCGACCCA AGAACTCGTT GCCTTGTCTG  GTGCACATAC GATTGGGAGT AAAGGCTTTG GAGATCCATT TACTTTTGAC AATGCATACT ACAAAATCCT TCTTGAAAAA CCTTGGAGAT CTACTACATC CAAAATGACG AGTATGGTTG  GGCTTCCTTC GGATCATGCC CTCGTGGAGG ATGATGAGTG CTTAAGGTGG GTGAAAGAGT ATGCGGAAGA CCAAGACAAG TTCTTCAGAG ACTTCACCAA TGCTTATATC AAACTAGTTA 
ACTCTGGTGC CAAATGGAAA ACATTATGAT GTCTAATTTA TCTTATGTTA GTTCATAAAC ATGCCCTGAA AATTTTGGGT TGTAATGCAT AGTAATATTT TCCTTTCATA ACA 

Retrieve as FASTA