Entry information : MdAPx-R
Entry ID 5191
Creation 2007-04-13 (Christophe Dunand)
Last sequence changes 2011-05-03 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2011-07-28 (Catherine Mathe)
Peroxidase information: MdAPx-R
Name MdAPx-R
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Rosaceae Malus
Organism Malus domestica (apple tree)    [TaxId: 3750 ]
Cellular localisation N/D
Tissue type Leaves
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MdAPx-R
start..stop
S start..stop
PpeAPx-R 505 0 26..323 19..319
CclAPx-R 418 6e-148 5..323 3..335
CsAPx-R 417 2e-147 5..323 3..335
VvAPx-R 414 2e-146 31..323 23..330
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 7945..8113 169 N° 2 8212..8314 103 N° 3 8393..8520 128 N° 4 8811..8881 71
N° 5 9042..9084 43 N° 6 9167..9263 97 N° 7 9497..9580 84 N° 8 9809..9924 116
N° 9 10377..10434 58 N° 10 10949..11051 103  
join(7945..8113,8212..8314,8393..8520,8811..8881,9042..9084,9167..9263,9497..958 0,9809..9924,10377..10434,10949..11051)


exon

Literature and cross-references MdAPx-R
Literature Korban,S., Vodkin,L., Liu,L., Gasic,K., Gonzales,O., Hernandez,A., Aldwinckle,H., Malnoy,M., Carroll,N., Goldsbrough,P., Orvis,K., Clifton,S., Pape,D., Marra,M., Hillier,L., Martin,J., Wylie,T., Dante,M., Theising,B., Bowers,Y., Gibbons,M., Ritter,E., Ronko,I.,Tsagareishvili,R., Kennedy,S., Waterston,R. and Wilson,R. Apple Functional Genomics grant - NSF 0321702
DNA ref. GenBank:   ACYM01051383.1 (7945..11051)
EST ref. GenBank:   CX025415 [Fragment]
Protein sequence: MdAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   323
PWM (Da):   %s   34658.65  
PI (pH):   %s   6.37
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPITSTVALLCSSTPSIFTPSYSTTFPFNFNFPAKSLSTVNFHANPLPAVKAATSGKDHVLGRRGLVLTLTATLPWLLPFSECTAAKAAESDGSEYELMKEEIRKVVTKGKAAGVLRLVFHDAGTYQIDDNGGMDGSIVYELDRPENKGLKTPFILEKAKSEVEAVHPVSWADMIAVAGAEAVSICGGPTIQVPLGRLDSKEPDPEGKLPEETLDASGLKQSFQTKGFSTQELVALSGAHTIGNKGFGNPTVFDNTYFKILLEKPSGSMIGLPSDRALAKDDECLSWITKYAADQNMFFNDFKTAYLKLVNSGARWKSL

Retrieve as FASTA  
Remarks Complete sequence from 2 ESTs (CX025415 and CN490022) and genomic (9 introns). Cultivar="GoldRush".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCCAATTACCTCCACCGTCGCCCTCCTCTGCTCCTCAACCCCGTCCATCTTTACCCCCTCTTACTCCACCACATTCCCGTTCAACTTCAACTTTCCGGCCAAATCCCTCTCAACG
GTCAATTTTCACGCCAATCCTCTTCCCGCCGTCAAAGCCGCCACTTCAG
GTAAAAGCTAACAAAGCCCTAAATTCTCTGTTTGGTTGCTTGGAGGTAAAAGGAAACGCAATTCTATAAAT
TGATGCACCAAATGTTGAAAATCTCAGGTAAAGATCACGTCTTGGGCAGAAGAGGACTGGTGCTTACACTTACTGCCACACTGCCATGGCTGCTTCCTTTCTCTGAATGCACGGCGGCGA
AGGCGGCTGA
GTGAGTTGAACAAAATCTCCGATCTTTTCGTTTATTAAGAAATTTAAATATGTGCATAGTAATTACCGCATTTGGAAGGTCGGATGGAAGTGAATATGAGCTTATGAAGG
AGGAGATTAGGAAGGTGGTGACCAAGGGAAAGGCGGCCGGCGTGCTTCGTTTGGTGTTTCATGATGCCGGGACTTATCAAATTGATGACAATTCAG
GTACCGATATCTATATGCATTGAC
CATGCTCCTTACTCATTTCCACTACTCCATTGAATTTTTGAAGTTGGAGTAATTTCAATTGGAGTTAATATTCCTACACTTCCTGTAATACCGGGTATTGTGGGTCGAGGATGTGCGAGT
GGTTGACGTATGTTGCATTGTACAGTCAATTTTCTACGGATATGTTTCGGGTTGAATTGGATCTATTGTCTGTATTTCTTTCAAACTGGGACAAGTGCTCTACTATTACTACAATGCATC
TTCATTGCTGTTGTTAACTATTGCAGGTGGTATGGATGGTTCTATCGTTTATGAACTTGATAGACCGGAAAACAAAGGTCTTAAAACTCCTTTCAAGGCATGCCCCTTCTAAACTCTMTA
TRTAGATGTGTGTCGATTCAATCTTTTGGTTTCCATCGGGTTCCCAATTCTTAATCTTTTGCATAATGATTGAGTAAAGAAATTATTCATATGATCTTTTATCAGCTAACTCTTCGGTGG
ATTGAATTGTTGGTTAGATTCTAGAGAAAGCAAAGAGTGAGGTGGAAGCAGTACACCCAGGTTTTCTATCTAGTGAGATACAGTTGACTAGGTTTTAGTAGTGCCGAGTGCTGTGCTAAC
ATGTGGGTGTTTCCAAAACTAGTGTCCTGGGCAGACATGATTGCTGTGGCTGGAGCAGAAGCAGTTTCAATATGTGGAGGTCCTACAATCCAAGTTCCGTTAGGCAGACTAGATTCAAAG
TAAGATGCATCAAGGTGGAAAAAACCAACATCATGCTTGAACCTTTCAATAATTCAGTTGCCAAGTATTGCTAGCGTTAATGCAAACCCTAAAAATAGAAAAAATAGTTTCCAATTCTTG
TAGGAGCATCTATCTAGTGCTACCAAAAGCTATAATTCCTATTTTTAGAAATGATGCTGTGAATAGCTATATCTCTCTATCTCTCATCTTTTCTTCTTTTTTCATTTATTAGGGAGCCTG
ATCCCGAAGGAAAACTTCCTGAAGAAACTCTGGATGCTTCTGGTCTGAAGCAAAGCTTCCAAACAAAAGGCTTCTC
GTAAGTTCATATATGCTAAACGTTTGCAATATTTGGTGGCCGAG
GGTGTGGTTGTTGTTTATATCTAAAATAAACCGGATATGCATGAAGATTAAAGTCCTTGAGATATCAATGGACATTTTATTGATAGATTTACTTAGTTTCTGCATTTAATTGATTTCTGT
TCTAGTTATATGTTTATAGTGACTTGACTTGCTATGGGTTTGAACCATGTATATTTTTTTTCAGAACTCAGGAACTTGTTGCTCTGTCAGGAGCCCATACTATTGGAAATAAAGGTTTCG
GGAACCCAACGGTTTTTGACAATACATACTTCAAAATTCTTCTTGAGAAACCATCTTCAG
GTAAATAACAGCAACATGGATATAAGGTGCTTAATAAAATAGGCTTAAAAAAAAACTCGG
GATCTCCCTCAAGCTCCTGCTATTGGGGAATTTGTGTTACAGCTTGATAACTGAGCAACAATAGAAAAATAGGAATGCAATGGAGTAATGATGCTCTATTTTTAGAGTGAGTCAACTTTC
ACATTTCTGTTTGATCTTCAATGAATGTATACATATATATATTTTATTTTGATGTACACGTATGCTTTGATCAATTTGCTTGGGCAACATAGACATTTTTTTTGTTCAATGAATGCATCT
GTCATGATATTCACGATATAGTCGAAACAAAGTATTGTGACTTATCTATGTAGCATCTAAAATGAATGACTTGATAGAAAATTATTTTCTCGTCTTGTCAAAATATCAATTTTTTTTGTT
TTGCAATTTCTGATTCTATTCTTTGCATTCAGGTAGCATGATTGGCCTTCCCTCAGACCGTGCACTTGCCAAGGATGATGAATGCTTAAGGTCCATTTCCTTGTAGAAACTTTAATCTGT
GTACTTTTCTCTGTTCTGTCATGTGTTGCTGGGCATTTAAGCCAGTCGACTACTCTACTCAGTTATTCATAGAATATTAAAATGAATATAATCTGGTCAGAAGACTTGAAAAAAAAAAGA
GCCAACAATTTAAACARGAGTTATGCTAGAAAAATCTAAATTTGATGAAAATCAATCCACAAATTCCTCAAAGCGGTTGAGATAATTGTGATCATTCACAATTTCTTTTATGCAAGGGTT
CATGTTAGGAAATGAATTAAAGATTTTGTCACGGTGAGTTGACGCTACAGTTATGAACATTTTAGAACGATGGCCTCCTTCTTTAATTACTTTGATCTTACACATTTCTCATAAATGCCT
GATATGTCATGCKCTAGCGATCAGAATTTAGAAAAATGACAGCATCTAATGTTCCATTTTTATGTACGTGTAGTATTTGTTCCTTATTCATATCCAACTGAAGAGAAGCTTGTTTCCTGC
ACAGCTGGATCACAAAGTATGCCGCGGACCAGAATATGTTCTTCAACGATTTCAAGACGGCTTATCTCAAACTAGTGAATTCGGGAGCCAGGTGGAAGAGCTTGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCCAATTACCTCCACCGTCGCCCTCCTCTGCTCCTCAACCCCGTCCATCTTTACCCCCTCTTACTCCACCACATTCCCGTTCAACTTCAACTTTCCGGCCAAATCCCTCTCAACG
GTCAATTTTCACGCCAATCCTCTTCCCGCCGTCAAAGCCGCCACTTCAG
GTAAAGATCACGTCTTGGGCAGAAGAGGACTGGTGCTTACACTTACTGCCACACTGCCATGGCTGCTTCCT
TTCTCTGAATGCACGGCGGCGAAGGCGGCTGA
GTCGGATGGAAGTGAATATGAGCTTATGAAGGAGGAGATTAGGAAGGTGGTGACCAAGGGAAAGGCGGCCGGCGTGCTTCGTTTGGTG
TTTCATGATGCCGGGACTTATCAAATTGATGACAATTCAG
GTGGTATGGATGGTTCTATCGTTTATGAACTTGATAGACCGGAAAACAAAGGTCTTAAAACTCCTTTCAAGATTCTAGAG
AAAGCAAAGAGTGAGGTGGAAGCAGTACACCCAG
TGTCCTGGGCAGACATGATTGCTGTGGCTGGAGCAGAAGCAGTTTCAATATGTGGAGGTCCTACAATCCAAGTTCCGTTAGGCAGA
CTAGATTCAAA
GGAGCCTGATCCCGAAGGAAAACTTCCTGAAGAAACTCTGGATGCTTCTGGTCTGAAGCAAAGCTTCCAAACAAAAGGCTTCTCAACTCAGGAACTTGTTGCTCTGTCA
GGAGCCCATACTATTGGAAATAAAGGTTTCGGGAACCCAACGGTTTTTGACAATACATACTTCAAAATTCTTCTTGAGAAACCATCTTCAG
GTAGCATGATTGGCCTTCCCTCAGACCGT
GCACTTGCCAAGGATGATGAATGCTTAAG
CTGGATCACAAAGTATGCCGCGGACCAGAATATGTTCTTCAACGATTTCAAGACGGCTTATCTCAAACTAGTGAATTCGGGAGCCAGGTGG
AAGAGCTTGTGA

Retrieve as FASTA