Entry information : TaAPx-Ra
Entry ID 5193
Creation 2007-04-13 (Christophe Dunand)
Last sequence changes 2010-08-13 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2011-08-23 (Catherine Mathe)
Peroxidase information: TaAPx-Ra
Name TaAPx-Ra
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Triticum
Organism Triticum aestivum (bread wheat)    [TaxId: 4565 ]
Cellular localisation N/D
Tissue type Shoots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TaAPx-Ra
start..stop
S start..stop
HvAPx-R 632 0 1..332 1..331
FarAPx-R 575 0 1..333 1..332
BdiAPx-R 552 0 1..333 1..329
ObrAPx-R 528 0 1..333 1..331
Literature and cross-references TaAPx-Ra
Literature Mochida,K., Kawaura,K., Shimosaka,E., Kawakami,N., Shin-I,T., Kohara,Y., Yamazaki,Y. and Ogihara,Y. Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat Mol. Genet. Genomics 276 (3), 304-312 (2006). 16832693
Cluster/Prediction ref. UniGene:   Ta.29220
Protein sequence: TaAPx-Ra
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   333
PWM (Da):   %s   35573.87  
PI (pH):   %s   6.99
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MELTNTPHLA SSSFFFSSCS PCACRSRRTG KAVITAFAAG SRCSADSIYA CPEPIEQHNV DSLSVASGPA NTQCYRRRDF AAVALLPFLL PHVDMASAAD SYDGSIIQNG VRNVLSKVKA  AGVLRLVFHD AGTFDISDKS GGMNGSIIYE ADRPENAGLS KSLKILRKAK EGINQVQQVS WADLIAVAGA EAVALCGGPE IPIRLGRLDS STADPTGKLP EETLDVVALK TSFGKKGFST 
QEMVVLSGAH TIGGKGFGNP NAFDNAYFKV LLEKPRPTSS GMPIGLPTDW ALTEDDECLR WINIYAKDQD KFFADFRDAY TKLVNSGASW RTA 

Retrieve as FASTA  
Remarks Complete sequence from 4 ESTs + CV761445. Cultivar="Chinese Spring", "Stephens" and "Kmppd(CS)".
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGAGCTCA CCAACACCCC CCATCTTGCC TCCTCCAGCT TCTTCTTCTC CAGCTGCAGT CCTTGCGCCT GCAGGAGTAG AAGAACTGGG AAGGCTGTGA TAACAGCGTT TGCTGCTGGT  AGTAGGTGCA GTGCTGATTC TATTTATGCA TGCCCAGAGC CCATTGAACA GCATAATGTA GACAGCCTTT CAGTGGCCTC AGGTCCTGCA AATACCCAAT GTTATAGAAG GAGAGATTTT  GCTGCTGTTG CTCTGCTCCC TTTTCTACTT CCTCATGTTG ATATGGCGAG TGCGGCTGAC TCATATGATG GATCAATTAT TCAAAACGGT GTGAGGAATG TCTTATCCAA GGTGAAAGCA  GCTGGCGTGC TTCGTTTGGT TTTCCATGAT GCAGGGACTT TTGATATTAG TGACAAATCA GGTGGCATGA ATGGCTCCAT AATCTATGAA GCTGACAGAC CTGAAAATGC AGGACTTAGT  AAATCCTTAA AGATACTACG AAAAGCAAAA GAAGGAATCA ACCAGGTTCA GCAAGTGTCA TGGGCGGACT TGATTGCAGT GGCTGGTGCT GAAGCAGTTG CACTCTGTGG AGGGCCTGAA  ATTCCCATAC GATTAGGCCG TTTAGATTCC AGCACTGCTG ATCCTACTGG TAAACTTCCT GAAGAAACAT TGGATGTGGT GGCCTTGAAA ACATCATTTG GCAAAAAGGG CTTTTCGACA  CAGGAGATGG TCGTTTTGTC TGGAGCTCAC ACAATTGGGG GTAAAGGATT TGGAAATCCA AATGCTTTTG ATAACGCCTA TTTCAAAGTA CTCCTTGAGA AGCCACGGCC AACTTCATCT  GGCATGCCGA TAGGGCTGCC CACAGATTGG GCACTCACTG AAGATGATGA ATGCTTAAGG TGGATCAATA TCTATGCAAA GGACCAGGAT AAATTTTTCG CCGACTTCAG AGATGCATAT 
ACCAAGCTTG TAAACAGCGG AGCCTCGTGG AGAACAGCTT AG 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATTACTGGCA TTCAAACAAG GCGAGCAGGA AGGGGATGGA GCTCACCAAC ACCCCCCATC TTGCCTCCTC CAGCTTCTTC TTCTCCAGCT GCAGTCCTTG CGCCTGCAGG AGTAGAAGAA  CTGGGAAGGC TGTGATAACA GCGTTTGCTG CTGGTAGTAG GTGCAGTGCT GATTCTATTT ATGCATGCCC AGAGCCCATT GAACAGCATA ATGTAGACAG CCTTTCAGTG GCCTCAGGTC  CTGCAAATAC CCAATGTTAT AGAAGGAGAG ATTTTGCTGC TGTTGCTCTG CTCCCTTTTC TACTTCCTCA TGTTGATATG GCGAGTGCGG CTGACTCATA TGATGGATCA ATTATTCAAA  ACGGTGTGAG GAATGTCTTA TCCAAGGTGA AAGCAGCTGG CGTGCTTCGT TTGGTTTTCC ATGATGCAGG GACTTTTGAT ATTAGTGACA AATCAGGTGG CATGAATGGC TCCATAATCT  ATGAAGCTGA CAGACCTGAA AATGCAGGAC TTAGTAAATC CTTAAAGATA CTACGAAAAG CAAAAGAAGG AATCAACCAG GTTCAGCAAG TGTCATGGGC GGACTTGATT GCAGTGGCTG  GTGCTGAAGC AGTTGCACTC TGTGGAGGGC CTGAAATTCC CATACGATTA GGCCGTTTAG ATTCCAGCAC TGCTGATCCT ACTGGTAAAC TTCCTGAAGA AACATTGGAT GTGGTGGCCT  TGAAAACATC ATTTGGCAAA AAGGGCTTTT CGACACAGGA GATGGTCGTT TTGTCTGGAG CTCACACAAT TGGGGGTAAA GGATTTGGAA ATCCAAATGC TTTTGATAAC GCCTATTTCA  AAGTACTCCT TGAGAAGCCA CGGCCAACTT CATCTGGCAT GCCGATAGGG CTGCCCACAG ATTGGGCACT CACTGAAGAT GATGAATGCT TAAGGTGGAT CAATATCTAT GCAAAGGACC  AGGATAAATT TTTCGCCGAC TTCAGAGATG CATATACCAA GCTTGTAAAC AGCGGAGCCT CGTGGAGAAC AGCTTAGTTA GGATTACCGA GTTTTTTCTG TCGAAACAGA CTCTACACAA  CTGTAGAATT ACCAGGTCTG TGCAAGATTC GTGGAAATTT TGCTCGCTCT GTAGTGCTGC ACTGCTGCCC TATCCCCCGT GCATTGTTAC CGAAACGTCA AGATACTTGT AGCTATGAAA 
TAGTGTTACT GCACCCAACA AAAATTGTGT AAATTA 

Retrieve as FASTA