Entry information : GmPrx[P]105 (Glyma.11G041700 [)
Entry ID 549
Creation 2005-06-21 (Christophe Dunand)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-12 (Christophe Dunand)
Peroxidase information: GmPrx[P]105 (Glyma.11G041700 [)
Name (synonym) GmPrx[P]105 (Glyma.11G041700 [)
Class Class III peroxidase     [Orthogroup: Prx041]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type Roots of 'Supernod' plants
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]105
start..stop
S start..stop
GmPrx105 422 2e-150 1..258 1..332
MtPrx90 355 2e-124 16..257 16..331
GmPrx[P]313 303 4e-105 51..258 2..240
PpePrx23 302 3e-103 1..258 1..333
Literature and cross-references GmPrx[P]105 (Glyma.11G041700 [)
Literature Public Soybean EST Project.
DNA ref. Phytozome 12:   Gm11 (3041673..3043186)
Protein sequence: GmPrx[P]105 (Glyma.11G041700 [)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   258 (236)
PWM (Da):   %s   28240.48 (25734.1)  
PI (pH):   %s   4.67 (4.58) Peptide Signal:   %s   cut: 23 range:23-258
Sequence
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Send to Peroxiscan
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MERMRLLVIF ISILFNATTL SGVELLVHDY YKEKCPLAED IVRHNVEMDx TSEKLAGLNL NSLRGFEVID KIKFLLEEEC PITVSCADIL AMAARDAVEL RGGPRWEVLL GRKDSLESSF  GGANIxIPAP NSSSEVFIDN FKQQDLDIED LVTLLGICPV EGRDNKFAPL DFQTTKRFDN HYFTNILKxK GLLGSDNVLI SQDLGGEITE PGLKExAYAS NEKLFFASFA KSMIKMGNIN 
VLTGSEGEIR RNCRFVNA 

Retrieve as FASTA  
Remarks Pseudogene sequence from genomic. Incorrect prediction from Phytozome (end of exon 1, start of exon 2 and start of exon 4 are missing). No EST.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGAGCGTA TGAGACTCTT AGTCATCTTT ATTTCTATTT TGTTCAATGC TACAACTCTG AGTGGCGTTG AACTTCTTGT TCATGACTAC TACAAGGAGA AGTGTCCCTT AGCTGAAGAC  ATCGTTAGGC ATAATGTGGA AATGGATGnn ACAAGTGAAA AGCTTGCAGG ACTAAATCTG AACTCTTTAC GTGGATTTGA GGTCATAGAC AAGATAAAGT TTTTGCTGGA AGAGGAATGT  CCTATCACTG TTTCATGTGC TGACATCCTT GCCATGGCTG CTCGTGATGC AGTTGAATTG GTAAACACTG CTTTGTCACA GTTGAATTGG AAGAGTTATT TAATACTTAT TATTTTGTTG  CTTAAAAACA ATTTCTATTG TTTGTTTTTG AAGAGAGGAG GACCAAGATG GGAAGTCTTG CTAGGAAGGA AGGATTCTCT GGAGTCAAGT TTCGGTGGAG CTAACATTCn nATTCCTGCT  CCAAATTCAT CTTCAGAGGT TTTCATAGAT AATTTTAAGC AACAAGACCT TGACATAGAG GACTTGGTAA CTCTATTAGG TATATTATTA TTTTGACAAG TTACTTATGT GTTGTTTTGT  TTCTATTATT CATCAATCAA AAGTGAAATT TCACCTCAGC AATATGCATA ATCTTTTAAT GCAATTGTTT TTTTTGAATG ATTATCAAAA TAATAATCCA ATTTTAATTA GAGAATAATA  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnAATAAAC  CTATATCTAA ATCTTGTTTT ATTACTTATT CAAACAAACA ATTAAATTAA TATTTCGGGG CACTGAAGAA GAAAATAACC TGGGTGTATT ATATATCCAA TAGGAATAAA AACAATAAAA  TTAAAAGATT GAATTGTCTA ATAAAATAGC AGACATTAAA AAAATGGAAA AATTGAAAAA CTCAAAATGT TGAAGGCGAA TTGATTATCA AACATACAAA AAGTGATTAT GTACTTAAAT  CTTGCGGTTC TCATCTGCCC TGTTGAGGGA AGGGACAACA AATTTGCACC CTTGGATTTT CAAACCACAA AAAGATTTGA CAATCACTAC TTCACAAACA TTCTTAAAGn nAAGGGCTTG  TTAGGTTCTG ATAATGTTCT GATCAGCCAG GACTTGGGTG GAGAGATTAC AGAGCCAGGA CTTAAAGAAG GnGCTTATGC CTCCAACGAA AAACTTTTCT TTGCTTCATT TGCTAAATCT 
ATGATTAAGA TGGGAAACAT CAATGTTCTT ACAGGAAGTG AGGGAGAAAT TAGAAGGAAT TGTAGGTTTG TCAATGCTTA G 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGAGCGTA TGAGACTCTT AGTCATCTTT ATTTCTATTT TGTTCAATGC TACAACTCTG AGTGGCGTTG AACTTCTTGT TCATGACTAC TACAAGGAGA AGTGTCCCTT AGCTGAAGAC  ATCGTTAGGC ATAATGTGGA AATGGATGnn ACAAGTGAAA AGCTTGCAGG ACTAAATCTG AACTCTTTAC GTGGATTTGA GGTCATAGAC AAGATAAAGT TTTTGCTGGA AGAGGAATGT  CCTATCACTG TTTCATGTGC TGACATCCTT GCCATGGCTG CTCGTGATGC AGTTGAATTG AGAGGAGGAC CAAGATGGGA AGTCTTGCTA GGAAGGAAGG ATTCTCTGGA GTCAAGTTTC  GGTGGAGCTA ACATTCnnAT TCCTGCTCCA AATTCATCTT CAGAGGTTTT CATAGATAAT TTTAAGCAAC AAGACCTTGA CATAGAGGAC TTGGTAACTC TATTAGGTAT CTGCCCTGTT  GAGGGAAGGG ACAACAAATT TGCACCCTTG GATTTTCAAA CCACAAAAAG ATTTGACAAT CACTACTTCA CAAACATTCT TAAAGnnAAG GGCTTGTTAG GTTCTGATAA TGTTCTGATC  AGCCAGGACT TGGGTGGAGA GATTACAGAG CCAGGACTTA AAGAAGGnGC TTATGCCTCC AACGAAAAAC TTTTCTTTGC TTCATTTGCT AAATCTATGA TTAAGATGGG AAACATCAAT 
GTTCTTACAG GAAGTGAGGG AGAAATTAGA AGGAATTGTA GGTTTGTCAA TGCTTAG 

Retrieve as FASTA