Entry information : PpaGPx01
Entry ID 5755
Creation 2007-08-20 (Christophe Dunand)
Last sequence changes 2012-09-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-09-24 (Christophe Dunand)
Peroxidase information: PpaGPx01
Name PpaGPx01
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue types Chloronemata
Protonema
Sporophyte
Inducer Abscissic acid treatment
Repressor Abscisic acid (ABA)
Best BLASTp hits
Perox score E-value PpaGPx01
start..stop
S start..stop
PpaGPx02 282 2e-99 2..168 7..172
MpGPx02 254 1e-86 7..168 108..268
AcvGPx06-2 244 3e-84 1..168 1..165
ZmGPx01 244 3e-84 1..168 1..165
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6684..7196 513  
complement(join(6684..7196))


exon

Literature and cross-references PpaGPx01
Literature Fujita,T., Nishiyama,T., Shin-i,T., Kohara,Y. and Hasebe,M.
Physcomitrella patens EST at a stage of the first asymmetric cell division of protoplasts
DNA ref. Phytozome 11:   scaffold_98 (7196..6684)
EST ref. GenBank:   BJ947150.1
Cluster/Prediction ref. UniGene:   Ppa.4266
Protein sequence: PpaGPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   170
PWM (Da):   %s   18932.68  
PI (pH):   %s   7.99
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGSKEAGQT IYDFVVKDID GSDVELSKYR GKVLLIVNVA SKCGLTTTNY KELADVYTKY KSQDFEILAF PCNQFGGQEP GTNEQIKEFA CTRFKAEYPI FDKINVNGPQ EAPLYKYLKL 
QKGGGWLLGD SIKWNFAKFL VDKNGNVVDR FAPTTPPSKI EKSIETYLSR 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and 82 ESTs.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGGT CAAAAGAAGC CGGCCAAACG ATTTACGACT TCGTTGTGAA GGACATCGAC GGCAGCGATG TCGAGTTGAG CAAGTACAGG GGCAAGGTGC TGTTGATTGT TAACGTTGCG  TCGAAGTGCG GGTTGACGAC TACCAATTAC AAAGAGCTCG CGGACGTGTA CACTAAATAC AAGAGTCAGG ATTTTGAGAT TTTGGCATTC CCTTGCAATC AGTTCGGAGG ACAGGAGCCT  GGGACGAATG AGCAGATCAA GGAATTTGCG TGCACGAGGT TTAAAGCCGA GTACCCTATT TTCGACAAGA TCAATGTGAA TGGTCCTCAG GAGGCACCAC TCTACAAGTA TTTGAAGTTG  CAGAAAGGAG GCGGATGGTT GTTGGGGGAT AGCATTAAGT GGAATTTCGC CAAGTTTCTC GTGGACAAGA ATGGGAACGT CGTGGACCGC TTTGCACCCA CTACTCCTCC TTCAAAGATA 
GAGAAGTCTA TCGAAACTTA TTTGAGCAGG TAG 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGGT CAAAAGAAGC CGGCCAAACG ATTTACGACT TCGTTGTGAA GGACATCGAC GGCAGCGATG TCGAGTTGAG CAAGTACAGG GGCAAGGTGC TGTTGATTGT TAACGTTGCG  TCGAAGTGCG GGTTGACGAC TACCAATTAC AAAGAGCTCG CGGACGTGTA CACTAAATAC AAGAGTCAGG ATTTTGAGAT TTTGGCATTC CCTTGCAATC AGTTCGGAGG ACAGGAGCCT  GGGACGAATG AGCAGATCAA GGAATTTGCG TGCACGAGGT TTAAAGCCGA GTACCCTATT TTCGACAAGA TCAATGTGAA TGGTCCTCAG GAGGCACCAC TCTACAAGTA TTTGAAGTTG  CAGAAAGGAG GCGGATGGTT GTTGGGGGAT AGCATTAAGT GGAATTTCGC CAAGTTTCTC GTGGACAAGA ATGGGAACGT CGTGGACCGC TTTGCACCCA CTACTCCTCC TTCAAAGATA 
GAGAAGTCTA TCGAAACTTA TTTGAGCAGG TAG 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGATTTCACG TTTAGGGCGA CTTTACTCCT TTCATTCCTC TTATGGTATA AATAGCTGCC CCCCTGCATC CCAGTCTGTC TCTGTCTTCG TCTTCGTCTT TGTCTGTGAC CCATCTTGCG  CGTATCCCAG ATTGTCCATT CAACGCTCTG GTTGCCGCTT TTGGTTGGAT TGCAGTTTGC TTCCCGGGTT TTTGCCTTGT TTAGGTCTGT GTGAGTAGAG TTTGTGCTGT GAGTTCGTTG  GTTGGAGTCC ATTTGAAACA TCGCTTGCTA TGGCGGGGTC AAAAGAAGCC GGCCAAACGA TTTACGACTT CGTTGTGAAG GACATCGACG GCAGCGATGT CGAGTTGAGC AAGTACAGGG  GCAAGGTGCT GTTGATTGTT AACGTTGCGT CGAAGTGCGG GTTGACGACT ACCAATTACA AAGAGCTCGC GGACGTGTAC ACTAAATACA AGAGTCAGGA TTTTGAGATT TTGGCATTCC  CTTGCAATCA GTTCGGAGGA CAGGAGCCTG GGACGAATGA GCAGATCAAG GAATTTGCGT GCACGAGGTT TAAAGCCGAG TACCCTATTT TCGACAAGAT CAATGTGAAT GGTCCTCAGG  AGGCACCACT CTACAAGTAT TTGAAGTTGC AGAAAGGAGG CGGATGGTTG TTGGGGGATA GCATTAAGTG GAATTTCGCC AAGTTTCTCG TGGACAAGAA TGGGAACGTC GTGGACCGCT  TTGCACCCAC TACTCCTCCT TCAAAGATAG AGAAGTCTAT CGAAACTTAT TTGAGCAGGT AGATTGTGAG TTTGGAGCTC GCCAGAGGTT CTGGTCATCT GGGCTGTGAG CGTAGAGAAT  TCTGTACAGC ATATACCACT GTTTTGTTCA TCTGGAGCGC GACGTTGTTG GTGCCTCTTT CCTGCTCAAC ACTGGTCTTT ATTCATCTTG GGAAGACAAT CGACGGGATG AATAAGTGCA  CCCATGTCTC ATTTTCCTTG CGTTGTGTGA TTACATTAGC ATCAAGTTCA TGGGTTCGTG AGGATCAAAG CATTGATGAC CACCCATGGA GTTTAGGCGT TTCACCACTT CGTCGTATGG  GATATACTCC AAAGCTGGAC CATCCTTGTT CTTTCGAAGT GAAACTGCTT GCATGAAGTT CTGCAAGGTC CAGTTGGAAC TGTAGAAACT CCACGTTTGA GCGTGTATTG TACCCGACTT  GCATATAAAA GCTTCTTTTG TATATCTTAC AGAGGCTCTT GCTCACCACC TGTATAGATA CTGGAGAAAT GCATTATCAG TGAGCGTTTT CATGCAAATT TTGCCAGACT GCTCACTTCT 
GGACGCATGT TGCTGTCTCC TTCCGC 

Retrieve as FASTA