Entry information : GhAPx-R
Entry ID 5759
Creation 2007-08-22 (Christophe Dunand)
Last sequence changes 2016-02-02 (Catherine Mathe)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-02-02 (Achraf Jemmat)
Peroxidase information: GhAPx-R
Name GhAPx-R
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Malvaceae Gossypium
Organism Gossypium hirsutum (upland cotton)    [TaxId: 3635 ]
Cellular localisation N/D
Tissue types Apical meristems
Buds
Flower buds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GhAPx-R
start..stop
S start..stop
GrAPx-R 614 0 23..333 23..333
CsAPx-R 482 7e-173 1..333 1..334
CclAPx-R 482 1e-172 2..333 4..334
PtAPx-R 464 1e-165 26..333 28..336
Literature and cross-references GhAPx-R
Literature Taliercio,E., Wendell,J.F., Udall,J.A. and Scheffler,B.E. ESTs from a Variety of Cotton Tissues.
EST ref. GenBank:   DW510671 [5' end]   DW502844 [3' end]
Cluster/Prediction ref. UniGene:   Ghi.15701
Protein sequence: GhAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   350
PWM (Da):   %s   37896.22  
PI (pH):   %s   8.92
Sequence
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Send to Peroxiscan
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MTSSSATLSF SSFSSTSALS LSKFRFKFPS FSRTSSLSSR AKPFTASSST TTHNISGEIR HCSLSRRRGL AFTATLPFLL PLHEFVDSVA AKAVESGSGQ SEYMRIKEEI IKVVTKGKAA  GVLRLVFHDA GTYEMDENSG GMNGSIVYEL ERPENAGLKK SLKVLEKAKK EIEAIQSVSW ADMIAVGGAE AVSICGGPKI PVTLGRLDSG EPDPEGKMPE ESLDASGLKQ CFRRKGFSTQ 
ELVALSGAHT LGSKGFGSPV AFDNSYFKIL LEKPWKSSAG MTSMIGLPSD RAIVEDDECL RWITKYADDQ NMFFEDFKNA YMKLVNCGAK WKSKHSLHVL SPSLHVLSP* 

Retrieve as FASTA  
Remarks Complete sequence from 7 ESTs. Cultivar="des119".
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACGAGTT CATCAGCAAC CTTAAGCTTC TCTTCATTTT CTTCAACCTC AGCCCTATCT TTATCTAAAT TCAGATTCAA ATTTCCCTCC TTTTCACGAA CCTCCTCTCT CTCATCTCGC  GCCAAGCCAT TCACCGCTTC TTCTTCCACC ACCACCCACA ACATCTCAGG AGAAATTCGC CATTGCAGTT TGAGTAGGAG GAGAGGGCTG GCTTTTACTG CAACGCTACC GTTTCTTCTT  CCTCTGCATG AATTTGTAGA CTCTGTTGCC GCTAAGGCAG TTGAGTCAGG TTCAGGTCAA AGCGAGTATA TGCGTATAAA GGAAGAGATA ATTAAAGTAG TAACAAAGGG AAAGGCTGCT  GGTGTTCTTC GTTTGGTATT TCATGATGCT GGAACCTATG AAATGGATGA AAATTCAGGT GGTATGAATG GTTCCATAGT TTATGAACTC GAAAGACCTG AAAATGCGGG CCTCAAGAAA  TCTCTGAAGG TTCTAGAGAA AGCCAAGAAA GAAATCGAAG CTATACAATC AGTATCATGG GCAGACATGA TTGCTGTTGG TGGAGCTGAA GCTGTTTCCA TTTGCGGAGG TCCGAAAATC  CCAGTTACAT TAGGCCGACT AGATTCTGGG GAGCCAGACC CTGAAGGTAA GATGCCTGAA GAGTCTCTGG ATGCTTCTGG CTTGAAGCAG TGTTTTCGAC GAAAGGGCTT CTCAACACAA  GAACTAGTTG CTCTGTCTGG GGCGCATACT CTTGGCAGTA AAGGTTTCGG AAGTCCGGTT GCTTTCGATA ACTCGTACTT CAAAATTCTT CTGGAGAAAC CATGGAAATC CTCTGCTGGT  ATGACAAGCA TGATCGGACT TCCTTCAGAC CGTGCCATTG TAGAGGACGA CGAATGCTTA AGGTGGATCA CAAAATATGC AGACGACCAG AATATGTTCT TTGAAGATTT TAAGAATGCA 
TATATGAAAC TAGTCAATTG TGGTGCAAAG TGGAAGAGCA AACATTCTCT TCATGTTTTG TCTCCTTCTC TTCATGTCTT GTCTCCTTGA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAACCACCCA TTTTGAAACC TTCAATAGAA GAAGATGACG AGTTCATCAG CAACCTTAAG CTTCTCTTCA TTTTCTTCAA CCTCAGCCCT ATCTTTATCT AAATTCAGAT TCAAATTTCC  CTCCTTTTCA CGAACCTCCT CTCTCTCATC TCGCGCCAAG CCATTCACCG CTTCTTCTTC CACCACCACC CACAACATCT CAGGAGAAAT TCGCCATTGC AGTTTGAGTA GGAGGAGAGG  GCTGGCTTTT ACTGCAACGC TACCGTTTCT TCTTCCTCTG CATGAATTTG TAGACTCTGT TGCCGCTAAG GCAGTTGAGT CAGGTTCAGG TCAAAGCGAG TATATGCGTA TAAAGGAAGA  GATAATTAAA GTAGTAACAA AGGGAAAGGC TGCTGGTGTT CTTCGTTTGG TATTTCATGA TGCTGGAACC TATGAAATGG ATGAAAATTC AGGTGGTATG AATGGTTCCA TAGTTTATGA  ACTCGAAAGA CCTGAAAATG CGGGCCTCAA GAAATCTCTG AAGGTTCTAG AGAAAGCCAA GAAAGAAATC GAAGCTATAC AATCAGTATC ATGGGCAGAC ATGATTGCTG TTGGTGGAGC  TGAAGCTGTT TCCATTTGCG GAGGTCCGAA AATCCCAGTT ACATTAGGCC GACTAGATTC TGGGGAGCCA GACCCTGAAG GTAAGATGCC TGAAGAGTCT CTGGATGCTT CTGGCTTGAA  GCAGTGTTTT CGACGAAAGG GCTTCTCAAC ACAAGAACTA GTTGCTCTGT CTGGGGCGCA TACTCTTGGC AGTAAAGGTT TCGGAAGTCC GGTTGCTTTC GATAACTCGT ACTTCAAAAT  TCTTCTGGAG AAACCATGGA AATCCTCTGC TGGTATGACA AGCATGATCG GACTTCCTTC AGACCGTGCC ATTGTAGAGG ACGACGAATG CTTAAGGTGG ATCACAAAAT ATGCAGACGA  CCAGAATATG TTCTTTGAAG ATTTTAAGAA TGCATATATG AAACTAGTCA ATTGTGGTGC AAAGTGGAAG AGCAAACATT CTCTTCATGT TTTGTCTCCT TCTCTTCATG TCTTGTCTCC 
TTGATTGGTC AAGACTCAGC AGGAAACTGT TGTGTAACAG ATGAATAAAA GGAGGATTTA TGCATACATT 

Retrieve as FASTA