Entry information : PsiAPx-R
Entry ID 5760
Creation 2007-08-22 (Christophe Dunand)
Last sequence changes 2010-08-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-05-03 (Christophe Dunand)
Peroxidase information: PsiAPx-R
Name PsiAPx-R
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Picea
Organism Picea sitchensis (Sitka spruce)    [TaxId: 3332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PsiAPx-R
start..stop
S start..stop
PgAPx-R 407 1e-147 19..217 1..199
GbAPx-R01 376 6e-133 1..215 134..348
WmAPx-R22 337 8e-118 1..215 120..332
VvAPx-R 327 4e-114 1..217 117..330
Literature and cross-references PsiAPx-R
Literature Ralph,S., Kolosova,N., Oddy,C., Chun,E., Reid,K.E., Liao,N., Jancsik,S., Moore,R., Mayo,M., Wagner,S., King,J., Yanchuk,A., Holt ,R., Jones,S., Marra,M., Ritland,C.E., Ritland,K. and Bohlmann,J. Expressed sequence tags from multiple Spruce cDNA libraries.
EST ref. GenBank:   ES863371.1 [3' end]
Cluster/Prediction ref. UniGene:   Psi.14898
Protein sequence: PsiAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   217
PWM (Da):   %s   23812.2  
PI (pH):   %s   5.09
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GLLRLVFHDA GTFNMAKNTG GMNGSIIYEL DRPANAGLDR SVKVLEKVKA VLDLIMQVSW ADLIALAGVE ALALCGGPII LIKLGRQDTK SPDPDGELPA ESLNASDLKE CFQRKGFSVQ 
ELVALSGAHT LGNKGFGNPT IFDNSYFQIL LERPWIKTSK GNEMETMIGL PSDHALVEDD ECLRWITIYA NNQEKFFDDF ARAYVKLINS GVHWRTL 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. Cultivar="FB3-425". 5'end is missing.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGGTTGTTGC GGCTGGTGTT TCATGATGCA GGCACTTTCA ATATGGCCAA GAACACAGGT GGTATGAATG GATCCATAAT TTACGAACTT GATAGGCCTG CAAATGCAGG TCTTGACCGC  TCAGTAAAGG TCCTAGAAAA AGTAAAGGCA GTGTTGGATT TGATCATGCA AGTGTCATGG GCAGACCTTA TAGCTTTGGC TGGTGTTGAA GCATTGGCAC TTTGTGGTGG CCCTATCATT  CTTATCAAAC TAGGAAGGCA AGATACAAAG TCACCTGATC CAGATGGGGA ACTTCCAGCA GAATCTCTCA ATGCATCTGA TCTGAAGGAA TGCTTCCAGA GGAAAGGCTT CTCGGTACAA  GAGCTTGTTG CATTATCTGG TGCTCACACA CTGGGGAATA AAGGTTTTGG AAACCCTACG ATTTTTGACA ACTCATACTT TCAAATACTT CTAGAAAGAC CTTGGATAAA AACAAGTAAA  GGAAATGAGA TGGAAACTAT GATAGGGCTT CCCTCTGATC ATGCTCTTGT TGAGGATGAT GAGTGCCTTA GGTGGATAAC AATATATGCA AACAACCAAG AAAAATTCTT TGATGATTTT  GCTAGAGCTT ACGTGAAACT TATTAATAGT GGTGTTCATT GGAGAACTCT TTAGGATTCC ACCTTTCCTT CTAATGATTG TCATTTAATT TGTCTTAATA TGTGAACAAC ATCTACAAAA 
TTACAATATA ATTTGTTAAC ATTGTTTGAA AAGATAAAAA AAAAAAAAAA AGAGCTCTT 

Retrieve as FASTA