Entry information : PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Entry ID 6076
Creation 2008-01-28 (Christophe Dunand)
Last sequence changes 2008-01-28 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-11 (Christophe Dunand)
Peroxidase information: PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Name (synonym) PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh08
start..stop
S start..stop
PtRboh05 1519 0 1..852 1..846
EgrRboh06 1190 0 6..852 3..857
EglRboh06 1187 0 6..852 3..857
EguRboh06 1185 0 6..852 3..857
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11143764..11144157 394 N° 2 11144254..11144416 163 N° 3 11144487..11144535 49 N° 4 11144648..11144761 114
N° 5 11144843..11145652 810 N° 6 11145822..11145917 96 N° 7 11145995..11146110 116 N° 8 11146192..11146294 103
N° 9 11146381..11146481 101 N° 10 11146566..11146731 166 N° 11 11146828..11146956 129 N° 12 11147063..11147191 129
N° 13 11147285..11147363 79 N° 14 11147482..11147591 110  
join(11143764..11144157,11144254..11144416,11144487..11144535,11144648..11144761 ,11144843..11145652,11145822..11145917,11145995..11146110,11146192..11146294,111 46381..11146481,11146566..11146731,11146828..11146956,11147063..11147191,1114728 5..11147363,11147482..11147591)


exon

Literature and cross-references PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
DNA ref. Phytozome 11:   scaffold_16 (11143764..11147591)
Cluster/Prediction ref. Genebank:   7487456
Omic ref. ePlant:   Potri.016G112200
Protein sequence: PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   0
PWM (Da):   %s   Transmb domain:   %s   o299-317i384-406o430-452i480-502o512-529i671-688o
PI (pH):   %s   6.11
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGSKTESKRWMLESIEIDRMRGVPVNDEPKATLPPKEPADAFIKRSASNLGASLRRTTSSALRKSGVLSSKPPLPKIERTASSASRGLKSLRFLDRTMTGKEMDAWRSIERRFDQFAVHERLPKDKFGICIGLGDSKEFAGEIFHAIARRKNICPANGITKDELKLFWEDMTKQDLDSRLGIFFDMCDKNGDGRLSELEVRVIELSASANKLTNLKQHAAVYAALIMEELDPDHLGYIGLWELETLLRGMVNNEDQTTKLDEKTHNLTNAMIPRRYRTPVTKFLTVSVEYIHENWRRIWVIALWLAVNFVLIFWKFKEFEKSPLFKISSYCVCLAKASAESLKFNMALILLPVCRRTLTKLRSSFLGTFIPFDDNISFHKTIALAIVIGTLAHTLAHVLCNIPLLSSCPEGKFMLFAGPLFHYQQPTYWFFMRSIVGVTGILMILIMGFSFTLATHHFRKNVVKLPGVFHRLAGFNAFWYAHHLLALAYLLCILHGYFLIFEKPWYAKTTWMYLIGPVLFYATERVFTKNQERFHRVDVIKAIIYTGNVLALYMGKPPGFKYESGMYLFIKCPDLSKFEWHPFSITSAPGDNNLSVHIRTVGDWTTELKNLFAVCEPPRDTKQNQGRLKRMETKALSNSNFDQIQATFPKILIKGPFGAPAQNYKKFDILLLIGLGIGATPFISILKDLLNQIKSNAAESRDQRMGSTDKKGPERAYFYWVTREQSSFDWFKGVMDDIADYDDNNIIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGLDVVSQSRIRTHFSRPNWRKVFTQMAETHKFSRIGVFYCGSALLVKPLRELCQEFTLNSSTRFQFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 16, 13 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAGCAAAACGGAATCAAAAAGGTGGATGCTTGAGAGCATTGAAATTGATAGGATGCGGGGTGTTCCTGTTAATGATGAACCTAAAGCCACCTTACCGCCCAAAGAACCTGCTGAT
GCATTCATCAAGAGGAGTGCAAGTAATCTTGGGGCATCCCTCAGAAGGACTACAAGTAGTGCCTTGAGGAAGAGTGGGGTTCTCTCTTCGAAACCTCCTCTCCCCAAGATAGAAAGAACA
GCATCATCAGCTTCTAGAGGACTTAAAAGCCTAAGGTTTCTTGATAGAACAATGACAGGAAAGGAAATGGATGCATGGAGATCCATCGAAAGGCGTTTTGATCAATTTGCAGTTCATGAA
AGGCTCCCTAAGGACAAATTTGGAATCTGCATTG
GTATGCTTTCGAAATCTTTCGTTGTTGACAGCATGCTTTTTCTCCTATCTTTTCAATATAAAAAACACAAATTGAACTTCATTCCC
TTTTTTGCAGGACTAGGAGATTCAAAAGAGTTTGCAGGAGAAATATTTCATGCAATTGCCAGGCGTAAGAATATATGCCCCGCAAATGGGATAACAAAAGATGAGTTGAAATTGTTTTGG
GAAGACATGACTAAACAAGATCTTGATTCTCGTCTTGGAATATTTTTTGATAT
GTAAGAAATCCCCCTTGTGAAGTCTAAACTGTTAAAGGGTTAACTTTAAGCTGACATAATGATTTAA
TAGGTGCGACAAGAATGGGGATGGGAGGCTTTCGGAGTTGGAAGTGAGGGAGGTGTGGCTATATTGCCCTTCTGCATAATTGTTATTTTCCTTTTCTTTTGTTTTTTTTTTCTTCCTCTT
CACATCACGATATTTCAATTTTCTGATTTTATGTTTTGCCAAAGGTTATAGAGTTGAGTGCCTCTGCAAACAAGCTCACAAATCTTAAACAGCATGCGGCAGTCTATGCAGCTCTAATCA
TGGAAGAACTTGATCCTGATCATCTTGGATATATAGGG
GTTGGTATTTATGCAAAAACTCTGGTTTCAAATTTTGTGACTGTGTGGCAATTAGAAACCCTACTTTTTCTAGTTTTGCAGC
TATGGGAGCTTGAAACTCTGCTAAGAGGGATGGTGAATAATGAAGATCAAACGACGAAGCTCGATGAAAAAACGCATAATCTCACAAATGCCATGATCCCAAGAAGATATAGGACTCCTG
TTACCAAATTCTTGACTGTGTCAGTAGAATATATTCATGAGAACTGGAGGAGAATATGGGTTATCGCGTTGTGGTTAGCTGTAAACTTCGTACTCATTTTTTGGAAGTTTAAGGAGTTCG
AGAAATCACCGCTATTCAAAATCTCAAGTTATTGTGTCTGTCTTGCCAAGGCTTCTGCCGAGAGTCTCAAGTTTAATATGGCCCTCATTCTTCTTCCTGTCTGCAGAAGAACACTTACTA
AGCTTAGATCATCATTTCTCGGCACCTTTATCCCTTTCGATGACAACATAAGCTTTCACAAGACGATTGCTTTGGCCATAGTAATTGGGACTCTAGCTCATACTCTAGCACATGTGCTTT
GTAATATTCCGTTGTTGAGTTCATGCCCAGAAGGCAAATTCATGCTATTTGCTGGACCATTGTTCCATTACCAACAGCCAACTTATTGGTTCTTCATGCGAAGCATTGTAGGCGTAACCG
GAATTCTGATGATCCTTATAATGGGGTTCTCATTTACTTTGGCGACACACCATTTCCGAAAGAACGTCGTTAAGTTACCAGGGGTATTTCACAGATTGGCAGGGTTTAATGCCTTTTGGT
ATGCGCATCATCTGCTCGCCCTAGCATATCTACTGTGCATTTTGCATGGCTACTTCTTAATATTTGAAAAGCCTTGGTATGCCAAAACG
GTATGCACAGCCCTCAGCTAGCTACTTCTTC
ATTAAGCATAACCTTTTTCTTCCATTTGTGCTTCAACAATTCTGAATGCAATATTTTCATGACAAAAAAATTTCTCTTCTGAACATATATAGGTTAAAGCGGTTGCTGAAACTAATTGTG
TTATCTAACTTTCCACAGACATGGATGTATCTCATTGGCCCAGTATTGTTCTATGCCACTGAGAGAGTCTTCACAAAAAATCAGGAACGCTTTCACCGTGTTGATGTCATTAAGGTCTGT
GTTATTGATGTTTATTGTCCTCATCCATGATATTAATTCATAAAACTCATCGTGTACTTTGGACATTACAGGCAATTATATATACAGGGAATGTTCTTGCTCTATACATGGGCAAGCCTC
CAGGATTTAAGTACGAAAGTGGAATGTACCTCTTTATCAAATGCCCGGATTTGTCCAAGTTTGAATG
GTAATCAATTGATCTCCGATAGTGTTTTCTGTTCCATAATACATCTCTTTAGT
AAAAAAATTCAGTTCTTATTTCATATAGGCATCCCTTCTCCATCACTTCTGCACCAGGAGATAACAATTTGAGTGTCCACATAAGAACTGTGGGTGATTGGACTACAGAACTCAAAAACT
TATTTGCGAAG
GTTATGGCTTGATTGGTGTCTCTCTATATCCATGCAACTGAGGCAGATTTAGTGACATGTTATTTGCAAATGTTATATTTTCGCAGGTCTGTGAGCCCCCCCGGGATAC
TAAACAAAACCAAGGAAGGCTAAAGAGAATGGAAACTAAAGCATTGTCAAACTCAAACTTCGATCAGATACAAGCAAC
GTCAGTAAATTAATTCTTAAATAATCTATACTTGAGATTTTG
TGAAAACTAAAACTAAAATAGCCCCCTTTTCACCTGAGGCAGATTTCCAAAGATCCTGATCAAAGGACCATTTGGAGCCCCCGCTCAGAATTACAAAAAGTTTGACATATTACTGCTCAT
AGGTCTAGGAATTGGAGCAACTCCATTTATCAGCATTTTGAAGGATCTGCTCAATCAGATCAAATCAAATGCAGCGGAGTCGAGGAGG
GTACGTTACGTATAGTGCAAAGCACACATCAC
TGCCATAAGATTGCTTAGACAAATAAGTTGAAAATCAATTCAGCTAACATATGATTGCACGCAGGACCAACGAATGGGTTCAACTGATAAAAAGGGTCCAGAAAGAGCATACTTTTACTG
GGTCACAAGAGAACAAAGTTCTTTTGATTGGTTCAAGGGTGTCATGGACGATATTGCAGACTATGATGATAAT
GTGGGTTTTGATAGCTGAAAAATGTCCTCATTTTACAAATTCTCAGC
CCGTCAAGGGTTTCTAATCTAACCAGTAATTATTCCTTTGGAACTTTTCAATGTCTCAGAATATAATTGAAATGCACAACTACTTGACTAGTGTGTATGAAGAAGGAGATGCAAGGTCTG
CACTTATTGCCATGGTACAAAAACTGCAGCATGCAAAGAATGGACTTGATGTTGTCTCCCAAAGTCGG
GTATTGATCAGCTTGACTGACCACTGCATCATTAACGATATACTATGTTTTT
TTCTTTTAAATTCCTTGCTAATATGTAATAGAATGTGACAGATAAGAACGCATTTTTCAAGACCCAACTGGAGAAAGGTATTTACTCAAATGGCAGAAACACATAAATTTTCTCGGATAG
GTAAGTGTGGAACTGTAAAGAACCTTTTTTGGTACCATGGCGCACCATATCTTTTTCAGCTATATCATTAGTTTTATGCTTAGGTCCTTTGTTTACTTCTTGATGTCTTGGTTTGCAGGC
GTCTTCTACTGTGGAAGTGCTCTCCTTGTCAAACCACTGAGGGAGCTTTGCCAAGAATTTACTCTAAATTCATCAACTCGTTTCCAATTTCATAAGGAGAACTTCTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAGCAAAACGGAATCAAAAAGGTGGATGCTTGAGAGCATTGAAATTGATAGGATGCGGGGTGTTCCTGTTAATGATGAACCTAAAGCCACCTTACCGCCCAAAGAACCTGCTGAT
GCATTCATCAAGAGGAGTGCAAGTAATCTTGGGGCATCCCTCAGAAGGACTACAAGTAGTGCCTTGAGGAAGAGTGGGGTTCTCTCTTCGAAACCTCCTCTCCCCAAGATAGAAAGAACA
GCATCATCAGCTTCTAGAGGACTTAAAAGCCTAAGGTTTCTTGATAGAACAATGACAGGAAAGGAAATGGATGCATGGAGATCCATCGAAAGGCGTTTTGATCAATTTGCAGTTCATGAA
AGGCTCCCTAAGGACAAATTTGGAATCTGCATTG
GACTAGGAGATTCAAAAGAGTTTGCAGGAGAAATATTTCATGCAATTGCCAGGCGTAAGAATATATGCCCCGCAAATGGGATAACA
AAAGATGAGTTGAAATTGTTTTGGGAAGACATGACTAAACAAGATCTTGATTCTCGTCTTGGAATATTTTTTGATAT
GTGCGACAAGAATGGGGATGGGAGGCTTTCGGAGTTGGAAGTG
AGGGAG
GTTATAGAGTTGAGTGCCTCTGCAAACAAGCTCACAAATCTTAAACAGCATGCGGCAGTCTATGCAGCTCTAATCATGGAAGAACTTGATCCTGATCATCTTGGATATATAGGG
CTATGGGAGCTTGAAACTCTGCTAAGAGGGATGGTGAATAATGAAGATCAAACGACGAAGCTCGATGAAAAAACGCATAATCTCACAAATGCCATGATCCCAAGAAGATATAGGACTCCT
GTTACCAAATTCTTGACTGTGTCAGTAGAATATATTCATGAGAACTGGAGGAGAATATGGGTTATCGCGTTGTGGTTAGCTGTAAACTTCGTACTCATTTTTTGGAAGTTTAAGGAGTTC
GAGAAATCACCGCTATTCAAAATCTCAAGTTATTGTGTCTGTCTTGCCAAGGCTTCTGCCGAGAGTCTCAAGTTTAATATGGCCCTCATTCTTCTTCCTGTCTGCAGAAGAACACTTACT
AAGCTTAGATCATCATTTCTCGGCACCTTTATCCCTTTCGATGACAACATAAGCTTTCACAAGACGATTGCTTTGGCCATAGTAATTGGGACTCTAGCTCATACTCTAGCACATGTGCTT
TGTAATATTCCGTTGTTGAGTTCATGCCCAGAAGGCAAATTCATGCTATTTGCTGGACCATTGTTCCATTACCAACAGCCAACTTATTGGTTCTTCATGCGAAGCATTGTAGGCGTAACC
GGAATTCTGATGATCCTTATAATGGGGTTCTCATTTACTTTGGCGACACACCATTTCCGAAAGAACGTCGTTAAGTTACCAGGGGTATTTCACAGATTGGCAGGGTTTAATGCCTTTTGG
TATGCGCATCATCTGCTCGCCCTAGCATATCTACTGTGCATTTTGCATGGCTACTTCTTAATATTTGAAAAGCCTTGGTATGCCAAAACG
ACATGGATGTATCTCATTGGCCCAGTATTG
TTCTATGCCACTGAGAGAGTCTTCACAAAAAATCAGGAACGCTTTCACCGTGTTGATGTCATTAAG
GCAATTATATATACAGGGAATGTTCTTGCTCTATACATGGGCAAGCCTCCAGGA
TTTAAGTACGAAAGTGGAATGTACCTCTTTATCAAATGCCCGGATTTGTCCAAGTTTGAATG
GCATCCCTTCTCCATCACTTCTGCACCAGGAGATAACAATTTGAGTGTCCACATAAGA
ACTGTGGGTGATTGGACTACAGAACTCAAAAACTTATTTGCGAAG
GTCTGTGAGCCCCCCCGGGATACTAAACAAAACCAAGGAAGGCTAAAGAGAATGGAAACTAAAGCATTGTCAAAC
TCAAACTTCGATCAGATACAAGCAAC
ATTTCCAAAGATCCTGATCAAAGGACCATTTGGAGCCCCCGCTCAGAATTACAAAAAGTTTGACATATTACTGCTCATAGGTCTAGGAATTGGA
GCAACTCCATTTATCAGCATTTTGAAGGATCTGCTCAATCAGATCAAATCAAATGCAGCGGAGTCGAGGAGG
GACCAACGAATGGGTTCAACTGATAAAAAGGGTCCAGAAAGAGCATAC
TTTTACTGGGTCACAAGAGAACAAAGTTCTTTTGATTGGTTCAAGGGTGTCATGGACGATATTGCAGACTATGATGATAAT
AATATAATTGAAATGCACAACTACTTGACTAGTGTGTAT
GAAGAAGGAGATGCAAGGTCTGCACTTATTGCCATGGTACAAAAACTGCAGCATGCAAAGAATGGACTTGATGTTGTCTCCCAAAGTCGG
ATAAGAACGCATTTTTCAAGACCCAACTGG
AGAAAGGTATTTACTCAAATGGCAGAAACACATAAATTTTCTCGGATAG
GCGTCTTCTACTGTGGAAGTGCTCTCCTTGTCAAACCACTGAGGGAGCTTTGCCAAGAATTTACTCTAAAT
TCATCAACTCGTTTCCAATTTCATAAGGAGAACTTCTAA

Retrieve as FASTA