Entry information : VvRboh01
Entry ID 6100
Creation 2008-02-17 (Daniel Marino)
Last sequence changes 2008-02-17 (Daniel Marino)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2009-03-01 (Christophe Dunand)
Peroxidase information: VvRboh01
Name VvRboh01
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvRboh01
start..stop
S start..stop
VvRboh01-2 1740 0 1..894 1..873
PtRboh10 1517 0 1..894 1..886
CsRboh03 1500 0 1..894 1..889
CclRboh03 1499 0 1..894 1..889
Literature and cross-references VvRboh01
Literature Velasco,R., Zharkikh,A., Troggio,M., Bhatnagar,S., Pindo,M., Cartwright,D., Coppola,G., Eldredge,G., Vezzulli,S., Malacarne,G., Mitchell,J., Stefanini,M., Segala,C., Gutin,N., Grando,M.S., Pruss,D., Dematte',L., Cestaro,A., Toppo,S., Fontana,P., Skolnick,M., Gutin,A., Salamini,F. and Viola,R. The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome.
Protein ref. UniProtKB:   A5CBK9
DNA ref. GenBank:   AM489166.2 (3593..8229)   CAAP02002468.1 (10581..5939)
EST ref. GenBank:   FC063747.1 [5' end]
Cluster/Prediction ref. UniGene:   Vvi.22607 [3' end]
Protein sequence: VvRboh01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   894
PWM (Da):   %s   101561.2 Transmb domain:   %s   o344-363i423-445o483-505i525-547o557-574i708-725o
PI (pH):   %s   9.66
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MEIQENHDQA SSETESVRSG RVGFSGPLSG PSSGPPSGPL LGNKKGSKKS ARFKSEEYVE ITLDVRDDSV SVQNIRGGDL ETSMLASRLE RQRPSLGSQL SFRIRQVSQE LKRITSSSSK  RFNKDDRSKS SATRALKGLQ FMTKNVGNEG WSAIEKRFDQ LSVNGALPKS SFGQCIGMKD SKEFASELFD ALARRRGITS NSITRAELRE FWEQITDQSF DARLQTFFDM VDKDDDGRIT  EGEVKEIITL SASANKLSKI QERADEYAAL IMEELDPDNL GYIELHNLEL LLLQAPNPST NLTTNSRILS QLLSQKLVPT KEPNPIKRCF RGIEYFIEDN WKRIWVVLLW LAICAGLFTW  KFIQYKNRAV FEVMGYCVTA AKGAAETLKF NMALILFPVC RNTITWLRSR TKLGMAVPFD DNINFHKVIA FGIALGVGVH AIAHLTCDFP RLLHATEEEY EPMEKYFGHD QPRSYWWFVK  GTEGWTGVVM VVLMAIAYIL AQPWFRRNRL NLPKTLKRLT GFNAFWYSHH LFIIVYVLFV IHGYYLYLTK KWYKKTTWMY LAVPIILYAC ERLIRAFRSG YKSVRILKVA VYPGNVLALH  MSKPQGFKYT SGQYMFVNCS AVSAFQWHPF SITSAPGDEY LSVYIRTLGD WTSQLKTVFS KACQPSNENQ SGLLRADMMK GENKPRLPKL LIDGPYGAPA QDYKKYDVVL LVGLGIGATP  LISIVKDVLN NVKQYQELEE GMTESNGERG NARKPFATRR AYFYWVTREQ GSFEWFRSVM NEVTENDKDG VIELHNYCTS VYEEGDARSA LIAMLQSLHH AKNGVDIVSG TRVKTHFARP 
NWRNVFKRVA VNHANQRVGV FYCGAPTLTG ELKRLALDFS RKTSTKFDFH KENF 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 14, 11 introns) and 2 ESTs. VvRboh01 is a protein coded by the same genomic sequence as VvRboh02. An alternative splicing gives rise to VvRboh01 and 02. VvRboh01 has 21 aminoacides more than VvRboh02(VQNIRGGDLETSMLASRLERQ).