Entry information : SmPrx35-1_84 (SmPrx35a_84)
Entry ID 6200
Creation 2008-06-27 (Christophe Dunand)
Last sequence changes 2008-06-27 (Christophe Dunand)
Sequence status complete
Reviewer Paula Nunes
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx35-1_84 (SmPrx35a_84)
Name (synonym) SmPrx35-1_84 (SmPrx35a_84)
Class Class III peroxidase    [Orthogroup: Prx010]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx35-1_84
start..stop
S start..stop
SmPrx35-2_170 669 0 1..328 1..328
SmPrx10-2_25 384 2e-134 8..328 4..323
SmPrx10-1_3 383 3e-134 8..328 4..323
SmPrx70-1_38 357 7e-124 11..328 7..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 209302..209520 219 N° 2 209592..209786 195 N° 3 209855..210020 166 N° 4 210076..210482 407
join(209302..209520,209592..209786,209855..210020,210076..210482)


exon

Literature and cross-references SmPrx35-1_84 (SmPrx35a_84)
Literature JGI genome project
DNA ref. Phytozome 11:   scaffold_84 (209302..210482)
mRNA ref. JGI transcript:   126670 [Incorrect splicing]
Protein sequence: SmPrx35-1_84 (SmPrx35a_84)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (303)
PWM (Da):   %s   34895.8 (32196.2)  
PI (pH):   %s   7.22 (7.68) Peptide Signal:   %s   cut: 26 range:26-328
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLLPLLLLLECIVLISLPRLGSIDAQKIQVGFYSTTCPQAESIVKNVVSSAVSANRGLAAGLLRLQFHDCFVQGCDASVLIDTTPSTKGGAEKDAPPNKTLRGFEVIDAAKAQLEAKCPGTVSCADILAFATRDAVVQVGGPRWDVPAGRRDGRISSAAEATSSLPDPSFSINQLTQRFAAKGLSQDNMITLSGAHTIGVAHCKTFINRLYGFSSSADTDPSLDPTFAQSLKAQCPRENPNPNTVVSLDPTPNTFDNSYYSNLALGRGLLASDELLFTDGSTTLNVALNSFFGSTWLQKFPDAMVKMSLIEVKTGSQGEIRKNCRRIN

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST. Incorrect transcript prediction from JGI (incorrect splicing intron 3).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGCTGCCACTGCTGCTGCTACTCGAATGCATTGTCTTGATTTCGCTGCCGCGACTGGGCAGCATTGATGCGCAGAAAATCCAAGTTGGATTCTACTCCACGACGTGTCCGCAGGCC
GAATCAATCGTCAAGAATGTGGTTAGCAGCGCGGTGTCGGCCAACCGAGGATTGGCCGCTGGACTTCTTCGCTTGCAATTCCACGACTGCTTCGTCCAG
GTTGCCAAACTTCTCCCAGTT
TCTCATACCGAGCTTCCTCTGCTTTCTCACTTCTCCTCCTGGATGGTCAGGGATGCGATGCTTCCGTGCTGATTGATACCACGCCGAGCACCAAAGGTGGAGCCGAGAAGGACGCCCCGC
CAAACAAGACGCTCCGGGGGTTCGAGGTGATTGACGCCGCAAAGGCGCAGCTCGAGGCAAAGTGCCCGGGAACAGTCTCGTGCGCGGACATTCTCGCGTTTGCCACGCGCGATGCAGTCG
TCCAG
GTCGATCGATTGCTAAGTTTGCTGGAGAGAATCGACAGAAACTCAATCGAGTTTTTCTTGTGCCACAGGTTGGAGGGCCGCGCTGGGACGTTCCCGCGGGACGACGAGACGGGCG
AATCTCCTCGGCAGCCGAGGCTACGTCCAGCTTGCCCGACCCTTCTTTCTCCATCAATCAGCTCACACAGCGCTTCGCTGCCAAAGGCCTCTCGCAAGACAACATGATAACTCTCTCAG
G
CAAGACACACCATCTTTCTTGTTTCCATCGAGAATCCATAGCTTGATCTTTCAGGAGCTCACACCATCGGAGTGGCACACTGCAAGACTTTCATCAACCGGCTGTATGGATTCAGCAGCA
GTGCCGACACGGACCCTTCTCTCGATCCAACCTTCGCGCAGAGCCTCAAAGCCCAATGCCCGCGAGAGAATCCCAATCCCAACACCGTCGTCAGCCTCGACCCCACGCCCAACACCTTCG
ACAACAGCTACTACTCCAACCTCGCGCTTGGCAGGGGATTGCTCGCCTCGGACGAGCTCCTCTTCACGGACGGATCCACCACGCTCAATGTGGCTCTCAATTCCTTCTTTGGATCAACTT
GGCTCCAGAAATTCCCCGACGCCATGGTGAAGATGAGCCTCATCGAAGTCAAGACGGGGAGCCAAGGCGAGATCCGGAAGAACTGCCGGAGGATCAACTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGCTGCCACTGCTGCTGCTACTCGAATGCATTGTCTTGATTTCGCTGCCGCGACTGGGCAGCATTGATGCGCAGAAAATCCAAGTTGGATTCTACTCCACGACGTGTCCGCAGGCC
GAATCAATCGTCAAGAATGTGGTTAGCAGCGCGGTGTCGGCCAACCGAGGATTGGCCGCTGGACTTCTTCGCTTGCAATTCCACGACTGCTTCGTCCAG
GGATGCGATGCTTCCGTGCTG
ATTGATACCACGCCGAGCACCAAAGGTGGAGCCGAGAAGGACGCCCCGCCAAACAAGACGCTCCGGGGGTTCGAGGTGATTGACGCCGCAAAGGCGCAGCTCGAGGCAAAGTGCCCGGGA
ACAGTCTCGTGCGCGGACATTCTCGCGTTTGCCACGCGCGATGCAGTCGTCCAG
GTTGGAGGGCCGCGCTGGGACGTTCCCGCGGGACGACGAGACGGGCGAATCTCCTCGGCAGCCGAG
GCTACGTCCAGCTTGCCCGACCCTTCTTTCTCCATCAATCAGCTCACACAGCGCTTCGCTGCCAAAGGCCTCTCGCAAGACAACATGATAACTCTCTCAG
GAGCTCACACCATCGGAGTG
GCACACTGCAAGACTTTCATCAACCGGCTGTATGGATTCAGCAGCAGTGCCGACACGGACCCTTCTCTCGATCCAACCTTCGCGCAGAGCCTCAAAGCCCAATGCCCGCGAGAGAATCCC
AATCCCAACACCGTCGTCAGCCTCGACCCCACGCCCAACACCTTCGACAACAGCTACTACTCCAACCTCGCGCTTGGCAGGGGATTGCTCGCCTCGGACGAGCTCCTCTTCACGGACGGA
TCCACCACGCTCAATGTGGCTCTCAATTCCTTCTTTGGATCAACTTGGCTCCAGAAATTCCCCGACGCCATGGTGAAGATGAGCCTCATCGAAGTCAAGACGGGGAGCCAAGGCGAGATC
CGGAAGAACTGCCGGAGGATCAACTAG

Retrieve as FASTA