Entry information : Sm2CysPrx01-1_46 (Sm2CysPrx01a_46)
Entry ID 6217
Creation 2008-07-07 (Christophe Dunand)
Last sequence changes 2011-02-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: Sm2CysPrx01-1_46 (Sm2CysPrx01a_46)
Name (synonym) Sm2CysPrx01-1_46 (Sm2CysPrx01a_46)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Sm2CysPrx01-1_46
start..stop
S start..stop
Sm2CysPrx01-2_96 554 0 1..272 1..272
Gb2CysPrx 390 1e-138 37..271 44..279
Thas2CysPrx02 389 2e-138 58..271 67..278
Vv2CysPrx01 389 3e-138 53..271 49..273
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1467732..1467950 219 N° 2 1468014..1468091 78 N° 3 1468159..1468240 82 N° 4 1468305..1468384 80
N° 5 1468448..1468573 126 N° 6 1468629..1468742 114 N° 7 1468807..1468926 120  
join(1467732..1467950,1468014..1468091,1468159..1468240,1468305..1468384,1468448 ..1468573,1468629..1468742,1468807..1468926)


exon

Literature and cross-references Sm2CysPrx01-1_46 (Sm2CysPrx01a_46)
Literature Richardson,P., Lucas,S., Rokhsar,D., Wang,M. and Lindquist,E.A. DOE Joint Genome Institute Selaginella moellendorffii EST project. Unpublished (2008)
DNA ref. Phytozome 11:   scaffold_46 (1467732..1468926)
EST ref. GenBank:   FE486357.1 [5' end]   FE478677.1 [3' end]
Cluster/Prediction ref. UniGene:   Smo.148
Protein sequence: Sm2CysPrx01-1_46 (Sm2CysPrx01a_46)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   272
PWM (Da):   %s   29271.15  
PI (pH):   %s   8.44
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATAGAAAFAATGHVVGGGATSSSSSAASAAPCRSSLFKAFDARLGASKISHLRRPAARIQPRRAFRSLAASASLDVPLVGNKAPDFEAESVFDQEFIKVKLSDYLGKKYVVLFFYPLDFTFVCPTEITAFSDRYSEFEKINTEVLGVSVDSFSHLAWVQTERKSGGLGDLRYPLVSDISKSISKAYNVLIPDQGIALRGLFIIDKEGIIQHATVNNLAIGRSVDETLRTLQAVQYVQDNPDEVCPAGWKPGDKSMKPDPKLSKDYFAAIA*

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns) and more than 100 ESTs. Unigene compiles ESTs from both haplotypes. Strain="Plant Delights".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGACTGCTGGAGCAGCAGCATTCGCAGCGACTGGCCACGTCGTGGGAGGAGGAGCCACCTCCTCGTCCTCGTCTGCCGCCTCCGCTGCTCCATGCCGATCGTCCCTCTTCAAGGCA
TTCGACGCGAGGCTAGGAGCGTCCAAGATTTCCCACCTCCGCCGCCCCGCCGCGCGGATCCAACCTAGGAGAGCTTTCAGGAGCCTGGCTGCTAGCGCG
GTGAGTCTAGCACTTTTCCAT
GGAGATTTCGACGCCTGCATTGTGGATTTTCCTCTTTTCTAGAGCTTGGATGTTCCATTGGTGGGAAACAAGGCTCCGGATTTCGAGGCCGAGTCGGTCTTCGATCAGGAATTCATCAAG
GTATTCACGAGGAAAATGAAAGGTTCCTCTTTGCTGTGTTCTTATCTCTCCCATGTCTTCGCCGCAGGTCAAGCTTTCGGACTACTTGGGCAAGAAGTACGTCGTTTTGTTCTTCTATCC
TTTGGACTTCACGTTCGTTTGCCCGACAG
GTTGGTCGGTGACAATTGTGTTGGTTGGAAGATTTCTCCTAACTTTTTCTTTTCCTCCTGCTAGAAATCACCGCTTTCAGCGATCGTTACT
CAGAATTTGAGAAGATCAACACGGAAGTGCTCGGAGTCTCTGTTGACAGTGTG
GTACGTGGAACTTTTCTCTTTAATTTTCTTTGCTCTCTGGCTAACAAAAGGATGCTCTTGCAGTTTT
CCCATCTGGCTTGGGTTCAAACCGAGAGAAAGTCGGGCGGCCTAGGCGATTTGCGCTATCCCCTTGTTTCAGACATCTCCAAGTCGATCTCCAAGGCTTACAACGTACTCATCCCCGATC
AG
GTTCGTGACAAACTCCGTGTATACTTTGCGCAGATGACGTTCTCTGTGTGTCCAGGGAATTGCCCTCCGAGGCCTCTTCATCATTGACAAAGAAGGGATCATCCAACACGCTACCGTT
AACAACCTTGCGATTGGAAGGAGTGTAGACGAGACCTTGAGAACGCTTCAG
GTGACGAAAGCTCGGCTGAATGCGAGTTTTAAGTTTTGATCTTTTTCTTCATTGTTTCTTCTAGGCGGT
CCAATACGTCCAGGACAATCCAGACGAGGTGTGCCCCGCCGGATGGAAGCCTGGCGACAAGTCAATGAAGCCCGATCCAAAGCTGAGCAAGGACTACTTCGCTGCTATAGCTTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGACTGCTGGAGCAGCAGCATTCGCAGCGACTGGCCACGTCGTGGGAGGAGGAGCCACCTCCTCGTCCTCGTCTGCCGCCTCCGCTGCTCCATGCCGATCGTCCCTCTTCAAGGCA
TTCGACGCGAGGCTAGGAGCGTCCAAGATTTCCCACCTCCGCCGCCCCGCCGCGCGGATCCAACCTAGGAGAGCTTTCAGGAGCCTGGCTGCTAGCGCG
AGCTTGGATGTTCCATTGGTG
GGAAACAAGGCTCCGGATTTCGAGGCCGAGTCGGTCTTCGATCAGGAATTCATCAAG
GTCAAGCTTTCGGACTACTTGGGCAAGAAGTACGTCGTTTTGTTCTTCTATCCTTTGGACTTC
ACGTTCGTTTGCCCGACAG
AAATCACCGCTTTCAGCGATCGTTACTCAGAATTTGAGAAGATCAACACGGAAGTGCTCGGAGTCTCTGTTGACAGTGTGTTTTCCCATCTGGCTTGGGTT
CAAACCGAGAGAAAGTCGGGCGGCCTAGGCGATTTGCGCTATCCCCTTGTTTCAGACATCTCCAAGTCGATCTCCAAGGCTTACAACGTACTCATCCCCGATCAG
GGAATTGCCCTCCGA
GGCCTCTTCATCATTGACAAAGAAGGGATCATCCAACACGCTACCGTTAACAACCTTGCGATTGGAAGGAGTGTAGACGAGACCTTGAGAACGCTTCAG
GCGGTCCAATACGTCCAGGAC
AATCCAGACGAGGTGTGCCCCGCCGGATGGAAGCCTGGCGACAAGTCAATGAAGCCCGATCCAAAGCTGAGCAAGGACTACTTCGCTGCTATAGCTTGA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGACTG CTGGAGCAGC AGCATTCGCA GCGACTGGCC ACGTCGTGGG AGGAGGAGCC ACCTCCTCGT CCTCGTCTGC CGCCTCCGCT GCTCCATGCC GATCGTCCCT CTTCAAGGCA  TTCGACGCGA GGCTAGGAGC GTCCAAGATT TCCCACCTCC GCCGCCCCGC CGCGCGGATC CAACCTAGGA GAGCTTTCAG GAGCCTGGCT GCTAGCGCGA GCTTGGATGT TCCATTGGTG  GGAAACAAGG CTCCGGATTT CGAGGCCGAG TCGGTCTTCG ATCAGGAATT CATCAAGGTC AAGCTTTCGG ACTACTTGGG CAAGAAGTAC GTCGTTTTGT TCTTCTATCC TTTGGACTTC  ACGTTCGTTT GCCCGACAGA AATCACCGCT TTCAGCGATC GTTACTCAGA ATTTGAGAAG ATCAACACGG AAGTGCTCGG AGTCTCTGTT GACAGTGTGT TTTCCCATCT GGCTTGGGTT  CAAACCGAGA GAAAGTCGGG CGGCCTAGGC GATTTGCGCT ATCCCCTTGT TTCAGACATC TCCAAGTCGA TCTCCAAGGC TTACAACGTA CTCATCCCCG ATCAGGGAAT TGCCCTCCGA  GGCCTCTTCA TCATTGACAA AGAAGGGATC ATCCAACACG CTACCGTTAA CAACCTTGCG ATTGGAAGGA GTGTAGACGA GACCTTGAGA ACGCTTCAGG CGGTCCAATA CGTCCAGGAC 
AATCCAGACG AGGTGTGCCC CGCCGGATGG AAGCCTGGCG ACAAGTCAAT GAAGCCCGAT CCAAAGCTGA GCAAGGACTA CTTCGCTGCT ATAGCTTGA 

Retrieve as FASTA