Entry information : PtaDiOx01
Entry ID 6220
Creation 2008-07-07 (Christophe Dunand)
Last sequence changes 2008-07-07 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2008-07-07 (Christophe Dunand)
Peroxidase information: PtaDiOx01
Name PtaDiOx01
Class Alpha-dioxygenase     [Orthogroup: DiOx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Pinus
Organism Pinus taeda (loblolly pine)    [TaxId: 3352 ]
Cellular localisation N/D
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtaDiOx01
start..stop
S start..stop
PabDiOx01 1125 0 1..623 1..639
PabDiOx213 1062 0 1..623 50..689
NatDiOx01 885 0 3..622 4..641
CclDiOx02 883 0 4..623 1..639
Literature and cross-references PtaDiOx01
Literature Pratt,L., Cordonnier-Pratt,M.M., Lorenz,W.W., Zimmermann,C. and Dean,J.F.D. An EST database from calcium-deficient loblolly pine (Pinus taeda) roots.
EST ref. GenBank:   DR052265 [5' end]   CX646050.1 [3' end]   CF477601.1 [Fragment]
Cluster/Prediction ref. UniGene:   Pta.16886
Protein sequence: PtaDiOx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   623
PWM (Da):   %s   70574.97  
PI (pH):   %s   7.51
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGLLDSLKNV FLQHQVIDKS LFATYSRMTL IDKFLFLIIH LVDRFYAWHK LPVFLGLFYL EIRRMLHQRY NLINVGTTPA GVRYNPIDYP YRTADGSYND PFNSETGNED TFFGRNMMPS  PQNDQLLRPD PTVVATKMLV RRKLIDTGTQ FNMLAAAWVQ FMIHDWVDHV EDTKQAGIST SSRVASQCPL KEFIFFESKE IPTGFYDIPK GYLNRRTAWW DGSAVYGNDI NQSRKVRTFK  DGKLKLGEDG LLLHESDGFA VTGDVRNSWA GLSILQALFI KEHNAVCDML xxxxxxxAKI HTIVWTVELL KMDTLLAGMR ANWYGLLGKK FKDAFGHTGS SILSGFISLP KPQNHGVPYS  LTEEFVSVYR MHSMLPDNIL LRDIHGTSTT SKTPPVLKQI DMRKLLGISG EKTLSEIGNE AQIVSMGHQA CGALDLWNYP VWMRNLIPQD PSGQDRPDRV DMPALEIYRD RERSVSRYNQ  FRRKMLMIPI AKWEDLTDDK EAIQTLQEVY GNDVEALDLL VGLMAEKKIK GYAISETAFF IFVLMASRRL EADRFFTSDF NKEVYTEKGL EWVNKKTESL KDVLYRHYPE LVEKWMNSSS 
AFSVWSASPE PMSHTPLYFR IPH 

Retrieve as FASTA  
Remarks Partial sequence from 8 ESTs. Strain="3 CCLONES". No overlap between 5' and 3' ends.