Entry information : LePrx27 (nd [2.3])
Entry ID 625
Creation 2006-08-07 (Christophe Dunand)
Last sequence changes 2014-08-27 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2014-08-27 (Christophe Dunand)
Peroxidase information: LePrx27 (nd [2.3])
Name (synonym) LePrx27 (nd [2.3])
Class Class III peroxidase     [Orthogroup: Prx014]*
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Solanum
Organism Lycopersicon esculentum (Tomato)    [TaxId: 4081 ]
Cellular localisation N/D
Tissue type Callus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LePrx27
start..stop
S start..stop
LePrx26 542 0 3..280 6..283
CanPrx02_hanbyul 537 0 7..280 13..286
NtPrx01-1A 519 0 3..280 10..288
NtPrx01-1B 517 0 3..280 10..288
Literature and cross-references LePrx27 (nd [2.3])
Literature Alcala,J. et al., unpublished
EST ref. GenBank:   BI921581.1 [5' end]   GW691615.1 [Fragment]
Protein sequence: LePrx27 (nd [2.3])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   280 (259)
PWM (Da):   %s   30274.26 (27979.1)  
PI (pH):   %s   6.65 (6.50) Peptide Signal:   %s   cut: 22 range:22-280
Sequence
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Send to Peroxiscan
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MTSSFIAIFS LLLLSTMQCH AQLSSTFYDR TCPNALTTIR TSIRQAVSSE RRMAASLIRL HFHDCFVQGC DASLLLDETP TIVSEKTALP NLGSVRGFGV IEDAKREVEK ICPGVVSCAD  ILAVAARDAS SLVGGPSWTV KLGRRDSTTA SHTVAETDLP GPFDPLSRLI SGFANKGLST RDMVALSGSH SIGQAQCFLF RDRIYSNGTD IDAGFASTRR RQCPQEDQNG NLAPLDLVTP 
NQLDNNYFKN LRQRKGLLQS DQVLLSGGST DDIVLEYSNS 

Retrieve as FASTA  
Remarks Partial sequence from ESTs and genomic (only exon was found in the chromo 11 due to "n" in the sequence) .
CDS
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ATGACTAGTT CTTTTATTGC TATATTTTCT CTTCTTCTAC TCTCTACCAT GCAATGCCAT GCACAACTTT CTTCCACTTT CTACGACCGA ACTTGCCCTA ATGCTCTCAC CACTATTCGT  ACAAGTATAA GACAAGCAGT TTCAAGCGAA CGTCGTATGG CTGCATCCCT CATTCGTCTT CATTTCCATG ATTGTTTTGT TCAGGGTTGT GATGCTTCTC TCTTGCTTGA TGAAACTCCA  ACTATTGTCA GTGAGAAGAC AGCGCTGCCA AATCTTGGAT CAGTTAGAGG CTTTGGTGTT ATAGAAGATG CAAAAAGAGA GGTTGAGAAA ATATGTCCTG GAGTTGTATC GTGTGCTGAC  ATACTTGCAG TTGCTGCTAG AGATGCATCA AGTCTCGTTG GCGGTCCATC ATGGACAGTG AAACTCGGAA GAAGAGACTC AACCACTGCA AGTCATACTG TTGCGGAAAC TGATCTTCCT  GGTCCTTTTG ATCCTCTTAG TAGGCTTATT TCTGGCTTTG CCAACAAAGG CCTTAGCACA AGGGATATGG TTGCTTTATC AGGATCACAT TCAATTGGAC AAGCACAATG TTTCCTTTTC  CGTGATAGAA TTTATAGCAA TGGAACAGAC ATCGATGCTA TTTGCTAGCA CTAGAAGACG ACAATGTCCT CAAGAAGATC AAAATGGAAA CCTAGCTCCA CTTGATTTGG TAACACCTAA  TCAATTGGAT AACAACTACT TCAAGAATTT GAGGCAAAGA AAAGGCCTTC TTCAATCGGA TCAAGTTCTT TTGAGTGGAG GATCTACCGA TGATATTGTT TTAGAATATA GCAATAGCCC 
TCGAG 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TATCTATAAT TCTTTCAACA AACTTTGCAT TTTAATATCA AAATGACTAG TTCTTTTATT GCTATATTTT CTCTTCTTCT ACTCTCTACC ATGCAATGCC ATGCACAACT TTCTTCCACT  TTCTACGACC GAACTTGCCC TAATGCTCTC ACCACTATTC GTACAAGTAT AAGACAAGCA GTTTCAAGCG AACGTCGTAT GGCTGCATCC CTCATTCGTC TTCATTTCCA TGATTGTTTT  GTTCAGGGTT GTGATGCTTC TCTCTTGCTT GATGAAACTC CAACTATTGT CAGTGAGAAG ACAGCGCTGC CAAATCTTGG ATCAGTTAGA GGCTTTGGTG TTATAGAAGA TGCAAAAAGA  GAGGTTGAGA AAATATGTCC TGGAGTTGTA TCGTGTGCTG ACATACTTGC AGTTGCTGCT AGAGATGCAT CAAGTCTCGT TGGCGGTCCA TCATGGACAG TGAAACTCGG AAGAAGAGAC  TCAACCACTG CAAGTCATAC TGTTGCGGAA ACTGATCTTC CTGGTCCTTT TGATCCTCTT AGTAGGCTTA TTTCTGGCTT TGCCAACAAA GGCCTTAGCA CAAGGGATAT GGTTGCTTTA  TCAGGATCAC ATTCAATTGG ACAAGCACAA TGTTTCCTTT TCCGTGATAG AATTTATAGC AATGGAACAG ACATCGATGC TGGATTTGCT AGCACTAGAA GACGACAATG TCCTCAAGAA  GATCAAAATG GAAACCTAGC TCCACTTGAT TTGGTAACAC CTAATCAATT GGATAACAAC TACTTCAAGA ATTTGAGGCA AAGAAAAGGC CTTCTTCAAT CGGATCAAGT TCTTTTGAGT 
GGAGGATCTA CCGATGATAT TGTTTTAGAA TATAGCAATA GCCCTCGAG 

Retrieve as FASTA