Entry information : UmPrxQ
Entry ID 6357
Creation 2008-09-22 (Christophe Dunand)
Last sequence changes 2012-04-05 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-04-05 (Christophe Dunand)
Peroxidase information: UmPrxQ
Name UmPrxQ
Class Atypical 2-Cysteine peroxiredoxin (type Q)    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Fungi Basidiomycota Ustilaginomycetes Ustilaginaceae Ustilago
Organism Ustilago maydis    [TaxId: 5270 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value UmPrxQ
start..stop
S start..stop
SrePrxQ 546 0 1..558 1..530
PcPrxQ 126 4e-33 33..189 3..158
PcarPrxQ01 124 1e-32 33..189 3..158
PplPrxQ01 117 2e-30 37..189 5..156
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 16325..18490 2166  
complement(join(16325..18490))


exon

Literature and cross-references UmPrxQ
Literature Kamper,J., et al.,Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444 (7115), 97-101 (2006).

DNA ref. GenBank:   AACP01000109.1 (16325..18490) JGI genome:   contig_1_109 (18490..16325)
Cluster/Prediction ref. JGI gene:   3211
Protein sequence: UmPrxQ
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   721
PWM (Da):   %s   77028.85  
PI (pH):   %s   10.32
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPHLPRVSAF PIAGETSILT AAGAALKVAA REKSSALIGH VAPEFCAQDH LGRTVSLHAT IQLGRPIVLY FFPLAGSPHC TKESCSFRDA VGTSPVFNQL DAVVIGISQD APARSKRFVD  EHQLGFRIVH DSNRHIMDAW GVGRGLLGLV DARCTFIIDH RGIVRAMLDG IWDYKGHRDF AERWLCRIEH DLAGRQRFYV PHDAHSVACD ELSRNVKIIY GDALPARGIG TAPRHGAALA  AIQANRSSIW RKSASSQLGS TSLSLSLAAE ANRFGSLHPA KSRRNLKNWL RSSDINAAYD QRLHLDYQLS RSSDQVDQHA HATLTDRAWH RLARRRRSFR FHRDAATNVV ARGTRAATRS  VSLSRQASAS RPGSLTPRTV STASESTRET CDTGAARDSH ALSVTTTIKN GTITDAVELE CKAMLRQRAA QVTRNASGIS GVSGAVGKTI ATKRRSNSLV VNRTTSVAHN GADAVPDAAK  ANSSDGHVSA ATVYANGNIA RMPLRRSVNG DTHDGVSLTT RVDARTRSAH VCNDTSHDSA YSLNSSSLPV PPRPSTRNGG VTIAPRASSL ASRSTSSCSI TSDGDHVHTP SSGAHAVQHQ  AAIEASRDDT RNRPAARPST LSSAQSCGAC IACRMQPITR SSSLATTRSL ELTNAVVVGI SAVESDHTST THQTRSSSTP SLATSLVSTC STDQDGYMLH HDRAYSPSLA GSEHTFGGWQ 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, no intron). Protein predicted is very long without homology with other PrxQ excepted other Ustilginales. No EST. Strain="521"
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCGCACC TTCCGCGCGT GTCGGCGTTT CCGATCGCTG GCGAGACGAG TATTCTGACA GCAGCAGGCG CTGCACTCAA GGTGGCAGCA AGGGAGAAAA GCTCGGCGTT GATCGGCCAT  GTGGCTCCCG AGTTCTGCGC ACAAGACCAC CTAGGTCGGA CTGTCTCACT GCACGCCACG ATCCAACTTG GACGTCCGAT CGTACTCTAC TTTTTCCCGC TCGCCGGATC GCCGCATTGC  ACAAAGGAGA GCTGCTCGTT CCGGGATGCG GTCGGCACGT CACCGGTTTT CAACCAGCTG GATGCGGTCG TCATTGGCAT CTCGCAGGAC GCGCCCGCTC GCTCGAAACG GTTTGTCGAC  GAACACCAGC TCGGCTTCCG TATCGTGCAT GATTCAAATC GGCACATCAT GGATGCGTGG GGTGTCGGAA GAGGTCTGCT GGGCCTAGTC GACGCTAGGT GTACCTTTAT CATCGACCAT  CGTGGCATCG TCAGAGCCAT GCTCGATGGC ATTTGGGATT ACAAGGGTCA TCGTGACTTT GCTGAGAGAT GGCTTTGTCG TATCGAGCAC GATCTCGCCG GAAGACAGCG CTTCTACGTG  CCACATGATG CTCATTCCGT CGCCTGCGAC GAGCTCTCGA GAAACGTGAA AATCATCTAC GGAGATGCTC TTCCTGCTCG CGGTATCGGC ACAGCTCCGC GCCATGGAGC CGCACTCGCT  GCGATCCAAG CCAACCGCTC GTCCATCTGG CGCAAGTCGG CATCGTCCCA ACTCGGCTCG ACGTCGCTTT CGCTCTCGCT CGCCGCCGAA GCCAACCGAT TCGGCTCGTT GCATCCTGCC  AAATCGCGGC GCAATCTGAA AAATTGGCTG CGTTCTTCGG ATATCAATGC CGCCTACGAT CAACGCTTGC ATCTGGATTA TCAACTCAGT CGCAGCTCGG ACCAGGTTGA CCAACACGCA  CATGCTACAC TTACCGATCG AGCGTGGCAC AGACTCGCTC GGCGCCGTCG GTCGTTCAGA TTCCATCGAG ATGCAGCGAC CAATGTCGTG GCGCGTGGCA CGCGCGCCGC CACGCGTTCA  GTTTCGCTTT CGCGACAAGC GTCGGCTTCG CGCCCCGGTT CGCTGACGCC TCGCACGGTC TCGACCGCTT CCGAATCGAC ACGAGAGACA TGCGACACCG GGGCAGCCCG CGACTCGCAT  GCGCTAAGCG TCACTACCAC GATCAAGAAC GGTACCATCA CCGACGCTGT TGAGCTCGAA TGCAAAGCCA TGTTGCGTCA AAGAGCGGCT CAAGTCACAC GGAATGCGAG TGGCATCAGT  GGCGTCAGTG GCGCAGTTGG CAAGACGATT GCCACCAAGC GTCGTTCGAA CTCACTGGTC GTGAACCGCA CGACGTCGGT GGCGCACAAT GGTGCAGACG CAGTACCGGA TGCAGCGAAA  GCAAACAGTT CCGACGGTCA CGTATCGGCG GCTACTGTGT ACGCAAATGG CAATATTGCA AGGATGCCAC TACGGCGATC GGTCAATGGC GACACTCACG ATGGCGTCTC GCTCACGACG  CGCGTCGACG CGCGCACTCG AAGCGCTCAC GTCTGCAACG ATACTTCGCA CGATTCCGCC TACTCGCTCA ACTCGTCTTC GCTGCCTGTT CCGCCACGAC CGTCGACGCG CAATGGCGGT  GTGACAATAG CGCCAAGAGC GTCATCGCTT GCTAGTCGAA GCACGTCGTC TTGCTCGATC ACGTCCGATG GCGATCACGT GCACACGCCA AGCAGCGGCG CGCATGCTGT GCAGCACCAA  GCTGCTATCG AAGCGAGCCG TGACGATACA CGCAATCGGC CGGCTGCGAG ACCGTCGACG TTATCGAGCG CGCAGTCGTG CGGTGCATGC ATCGCTTGTC GCATGCAACC CATCACACGC  TCTTCGTCTC TCGCCACCAC GCGCAGTCTC GAGCTGACCA ACGCTGTTGT CGTCGGCATC AGTGCAGTCG AATCCGACCA CACATCCACC ACACACCAAA CGCGCTCATC CAGCACTCCA  AGCTTGGCCA CCTCGCTCGT ATCCACGTGC TCAACAGATC AGGATGGCTA CATGCTACAC CACGACCGCG CATATTCTCC CAGTCTCGCT GGCTCCGAGC ATACTTTCGG GGGCTGGCAG 
GAGTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCGCACC TTCCGCGCGT GTCGGCGTTT CCGATCGCTG GCGAGACGAG TATTCTGACA GCAGCAGGCG CTGCACTCAA GGTGGCAGCA AGGGAGAAAA GCTCGGCGTT GATCGGCCAT  GTGGCTCCCG AGTTCTGCGC ACAAGACCAC CTAGGTCGGA CTGTCTCACT GCACGCCACG ATCCAACTTG GACGTCCGAT CGTACTCTAC TTTTTCCCGC TCGCCGGATC GCCGCATTGC  ACAAAGGAGA GCTGCTCGTT CCGGGATGCG GTCGGCACGT CACCGGTTTT CAACCAGCTG GATGCGGTCG TCATTGGCAT CTCGCAGGAC GCGCCCGCTC GCTCGAAACG GTTTGTCGAC  GAACACCAGC TCGGCTTCCG TATCGTGCAT GATTCAAATC GGCACATCAT GGATGCGTGG GGTGTCGGAA GAGGTCTGCT GGGCCTAGTC GACGCTAGGT GTACCTTTAT CATCGACCAT  CGTGGCATCG TCAGAGCCAT GCTCGATGGC ATTTGGGATT ACAAGGGTCA TCGTGACTTT GCTGAGAGAT GGCTTTGTCG TATCGAGCAC GATCTCGCCG GAAGACAGCG CTTCTACGTG  CCACATGATG CTCATTCCGT CGCCTGCGAC GAGCTCTCGA GAAACGTGAA AATCATCTAC GGAGATGCTC TTCCTGCTCG CGGTATCGGC ACAGCTCCGC GCCATGGAGC CGCACTCGCT  GCGATCCAAG CCAACCGCTC GTCCATCTGG CGCAAGTCGG CATCGTCCCA ACTCGGCTCG ACGTCGCTTT CGCTCTCGCT CGCCGCCGAA GCCAACCGAT TCGGCTCGTT GCATCCTGCC  AAATCGCGGC GCAATCTGAA AAATTGGCTG CGTTCTTCGG ATATCAATGC CGCCTACGAT CAACGCTTGC ATCTGGATTA TCAACTCAGT CGCAGCTCGG ACCAGGTTGA CCAACACGCA  CATGCTACAC TTACCGATCG AGCGTGGCAC AGACTCGCTC GGCGCCGTCG GTCGTTCAGA TTCCATCGAG ATGCAGCGAC CAATGTCGTG GCGCGTGGCA CGCGCGCCGC CACGCGTTCA  GTTTCGCTTT CGCGACAAGC GTCGGCTTCG CGCCCCGGTT CGCTGACGCC TCGCACGGTC TCGACCGCTT CCGAATCGAC ACGAGAGACA TGCGACACCG GGGCAGCCCG CGACTCGCAT  GCGCTAAGCG TCACTACCAC GATCAAGAAC GGTACCATCA CCGACGCTGT TGAGCTCGAA TGCAAAGCCA TGTTGCGTCA AAGAGCGGCT CAAGTCACAC GGAATGCGAG TGGCATCAGT  GGCGTCAGTG GCGCAGTTGG CAAGACGATT GCCACCAAGC GTCGTTCGAA CTCACTGGTC GTGAACCGCA CGACGTCGGT GGCGCACAAT GGTGCAGACG CAGTACCGGA TGCAGCGAAA  GCAAACAGTT CCGACGGTCA CGTATCGGCG GCTACTGTGT ACGCAAATGG CAATATTGCA AGGATGCCAC TACGGCGATC GGTCAATGGC GACACTCACG ATGGCGTCTC GCTCACGACG  CGCGTCGACG CGCGCACTCG AAGCGCTCAC GTCTGCAACG ATACTTCGCA CGATTCCGCC TACTCGCTCA ACTCGTCTTC GCTGCCTGTT CCGCCACGAC CGTCGACGCG CAATGGCGGT  GTGACAATAG CGCCAAGAGC GTCATCGCTT GCTAGTCGAA GCACGTCGTC TTGCTCGATC ACGTCCGATG GCGATCACGT GCACACGCCA AGCAGCGGCG CGCATGCTGT GCAGCACCAA  GCTGCTATCG AAGCGAGCCG TGACGATACA CGCAATCGGC CGGCTGCGAG ACCGTCGACG TTATCGAGCG CGCAGTCGTG CGGTGCATGC ATCGCTTGTC GCATGCAACC CATCACACGC  TCTTCGTCTC TCGCCACCAC GCGCAGTCTC GAGCTGACCA ACGCTGTTGT CGTCGGCATC AGTGCAGTCG AATCCGACCA CACATCCACC ACACACCAAA CGCGCTCATC CAGCACTCCA  AGCTTGGCCA CCTCGCTCGT ATCCACGTGC TCAACAGATC AGGATGGCTA CATGCTACAC CACGACCGCG CATATTCTCC CAGTCTCGCT GGCTCCGAGC ATACTTTCGG GGGCTGGCAG 
GAGTGA 

Retrieve as FASTA