Entry information : LePrx39 (Solyc05g055320.2.1[2.3])
Entry ID 637
Creation 2006-08-07 (Christophe Dunand)
Last sequence changes 2014-08-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-08-27 (Christophe Dunand)
Peroxidase information: LePrx39 (Solyc05g055320.2.1[2.3])
Name (synonym) LePrx39 (Solyc05g055320.2.1[2.3])
Class Class III peroxidase    [Orthogroup: Prx206]
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Solanum
Organism Lycopersicon esculentum (Tomato)    [TaxId: 4081 ]
Cellular localisation N/D
Tissue type Roots
Inducer Nutrient deficiency (Al, Zn, P, K, Fe, N)
Repressor N/D
Best BLASTp hits
Perox score E-value LePrx39
start..stop
S start..stop
NtPrx57-1B 555 0 1..334 1..336
NtPrx57-1A 504 0 1..314 1..316
StPrx31 428 1e-152 1..286 1..284
VvPrx28 401 4e-141 12..334 14..333
Literature and cross-references LePrx39 (Solyc05g055320.2.1[2.3])
Literature van der Hoeven,R.S. et al., unpublished
EST ref. GenBank:   BF097383
Protein sequence: LePrx39 (Solyc05g055320.2.1[2.3])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa): %sProtein length in amino acid 335 (307)
PWM (Da): %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
36639.67 (33723.2) Transmb domain: %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i5-27o
PI (pH): %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
8.99 (9.30) Peptide Signal: %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 28 range:28-334
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MDSKGFNCSV FVLVCCLVLS LSVSSLAKRQ PSCLIEVGYY RYTCPSAEAI VRKVVYKAVA RNPGIAAGLI RLHFHDCFVR GCDASVLLDG LNSEKESIAN KNSLRGFEVI DEAKKQLEAA  CPGTVSCADI LAFAARDSSY KVGKINYDVQ AGRRDGHVSI KDEALANLPS PFVGVKELIK SFARKGMSVD EMVTLSGAHS IGVAHCAVFA NRLYPQNKQQ NLPIDRVYER MLKSICPPES 
LTNGTGVANP TNFDVITPNK LDNKYYMDLK SNKGLLVTDQ TLMSDPKTAK MVNFNARYGR VWGKKFADAM VHMGTLDVLT GYKGEIRKNC HFVN* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, intron 1) and 1 EST.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGATTCTA AGGGCTTTAA TTGTTCTGTT TTTGTACTTG TTTGTTGTTT GGTTTTGTCT CTTTCAGTTT CATCGTTGGC TAAACGACAA CCCTCCTGTC TGATTGAAGT AGGTTACTAT  CGCTATACTT GTCCCTCTGC TGAAGCCATT GTGAGAAAGG TTGTGTATAA GGCCGTTGCT CGTAATCCAG GCATTGCTGC TGGCCTTATC AGGTTGCATT TTCATGATTG CTTCGTGAGG  GTACGTTGTG TTCTAATGTA CTATTGTTCT CTTGATGATC TCATTCTTCG AGTTACATTT AGTCTGCATG TTGAATTGTG TGACCATCTT ATCTGAAGTA CTCTTGAGCT GTTAGCGAGT  GTAGCATTAC ATTTAGTAAT TACTAGCTAA TGTTATGTCT CAACATTGCC TCTTTACGCG TTGGTTTGAG TTTTCTTATG TTATAAATAC ATGTAAACAC TTTTTTTTAC TTGTGTTACC  GTCTCATTAA GCTTTTAGAT GAGAGGAGTT TTACGCGTGT TACTTACATT TTTCATGTAC TTTAGGGATG TGATGCATCT GTGCTATTGG ATGGACTGAA TTCAGAAAAG GAAAGCATAG  CAAACAAGAA CAGTTTACGA GGTTTTGAGG TGATCGATGA AGCTAAAAAG CAGCTCGAGG CTGCATGTCC AGGAACTGTC TCGTGTGCTG ATATTCTAGC CTTTGCAGCT CGCGACAGTT  CTTACAAAGT TGGGAAAATA AACTATGATG TCCAAGCAGG ACGTCGTGAT GGACATGTTT CCATCAAGGA CGAGGCCTTA GCCAATCTCC CCTCTCCGTT TGTCGGTGTC AAGGAACTAA  TCAAGAGCTT TGCAAGAAAA GGTATGTCTG TTGATGAAAT GGTAACACTC TCTGGTGCAC ATTCTATTGG TGTTGCTCAT TGTGCTGTTT TCGCGAATCG TCTATACCCT CAAAACAAGC  AACAAAATCT ACCAATTGAT CGCGTATATG AGAGGATGTT GAAGTCTATT TGTCCACCAG AATCACTTAC AAATGGAACA GGAGTAGCAA ATCCTACTAA TTTTGATGTT ATAACACCAA  ACAAATTGGA TAACAAGTAC TATATGGATT TGAAGAGTAA CAAGGGACTT TTAGTTACTG ATCAAACATT GATGAGTGAT CCTAAAACCG CGAAAATGGT GAACTTTAAC GCGAGATATG 
GACGTGTATG GGGTAAGAAG TTCGCGGATG CAATGGTGCA TATGGGAACT TTAGACGTCC TCACAGGATA CAAGGGTGAA ATCAGGAAGA ACTGTCATTT CGTGAACTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGATTCTA AGGGCTTTAA TTGTTCTGTT TTTGTACTTG TTTGTTGTTT GGTTTTGTCT CTTTCAGTTT CATCGTTGGC TAAACGACAA CCCTCCTGTC TGATTGAAGT AGGTTACTAT  CGCTATACTT GTCCCTCTGC TGAAGCCATT GTGAGAAAGG TTGTGTATAA GGCCGTTGCT CGTAATCCAG GCATTGCTGC TGGCCTTATC AGGTTGCATT TTCATGATTG CTTCGTGAGG  GGATGTGATG CATCTGTGCT ATTGGATGGA CTGAATTCAG AAAAGGAAAG CATAGCAAAC AAGAACAGTT TACGAGGTTT TGAGGTGATC GATGAAGCTA AAAAGCAGCT CGAGGCTGCA  TGTCCAGGAA CTGTCTCGTG TGCTGATATT CTAGCCTTTG CAGCTCGCGA CAGTTCTTAC AAAGTTGGGA AAATAAACTA TGATGTCCAA GCAGGACGTC GTGATGGACA TGTTTCCATC  AAGGACGAGG CCTTAGCCAA TCTCCCCTCT CCGTTTGTCG GTGTCAAGGA ACTAATCAAG AGCTTTGCAA GAAAAGGTAT GTCTGTTGAT GAAATGGTAA CACTCTCTGG TGCACATTCT  ATTGGTGTTG CTCATTGTGC TGTTTTCGCG AATCGTCTAT ACCCTCAAAA CAAGCAACAA AATCTACCAA TTGATCGCGT ATATGAGAGG ATGTTGAAGT CTATTTGTCC ACCAGAATCA  CTTACAAATG GAACAGGAGT AGCAAATCCT ACTAATTTTG ATGTTATAAC ACCAAACAAA TTGGATAACA AGTACTATAT GGATTTGAAG AGTAACAAGG GACTTTTAGT TACTGATCAA  ACATTGATGA GTGATCCTAA AACCGCGAAA ATGGTGAACT TTAACGCGAG ATATGGACGT GTATGGGGTA AGAAGTTCGC GGATGCAATG GTGCATATGG GAACTTTAGA CGTCCTCACA 
GGATACAAGG GTGAAATCAG GAAGAACTGT CATTTCGTGA ACTAA 

Retrieve as FASTA