Entry information : Sm1CysPrx01-1_20 (Sm1CysPrx01a_20)
Entry ID 6381
Creation 2008-10-10 (Christophe Dunand)
Last sequence changes 2008-10-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: Sm1CysPrx01-1_20 (Sm1CysPrx01a_20)
Name (synonym) Sm1CysPrx01-1_20 (Sm1CysPrx01a_20)
Class 1-Cysteine peroxiredoxin    [Orthogroup: 1CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type Whole plant
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Sm1CysPrx01-1_20
start..stop
S start..stop
Sm1CysPrx01-2_62 456 1e-166 1..221 1..221
Ppa1CysPrx01 329 4e-116 1..221 1..221
Mp1CysPrx01 323 8e-114 1..221 1..221
Ppa1CysPrx03 320 8e-113 1..221 1..221
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1954557..1955222 666  
complement(join(1954557..1955222))


exon

Literature and cross-references Sm1CysPrx01-1_20 (Sm1CysPrx01a_20)
Literature Richardson,P., Lucas,S., Rokhsar,D., Wang,M. and Lindquist,E.A. DOE Joint Genome Institute Selaginella moellendorffii EST project. Unpublished (2008).
DNA ref. Phytozome 11:   scaffold_20 (1955222..1954557)
EST ref. GenBank:   FE500453.1 [5' end]
Cluster/Prediction ref. UniGene:   Smo.3428
Protein sequence: Sm1CysPrx01-1_20 (Sm1CysPrx01a_20)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   221
PWM (Da):   %s   24425.42  
PI (pH):   %s   6.9
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGLNLGDIVP DFKAESTMGT IKFHEYINGS WAILLSHPSD FTPVCTSELG SLASRIHEFD RRGVKVIALS CNDVNSHREW LGDIESYCPE TKVKYPIVAD PSRDLAVRFG MLDPVEKDAA 
GMPLTCRACF VIGPDKRVRL SILYPASTGR NFSELVRVID SLQLTDKFSV ATPANWENGR KCMILPTISD EKAKEMFPKG FDTVKVPSGK AYIRLVEQPT L 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and ESTs. Unigene contains ESTs from both haplotypes. Strain="Plant Delights".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTCTGA ATTTGGGCGA CATTGTGCCG GATTTCAAGG CGGAATCCAC AATGGGAACC ATCAAATTCC ACGAGTATAT CAACGGCAGC TGGGCGATTC TCCTCTCCCA CCCCAGCGAT  TTCACGCCCG TGTGCACGTC GGAGCTGGGC TCCCTGGCGT CGCGCATCCA CGAATTCGAT CGCCGCGGCG TCAAGGTGAT TGCTCTCAGC TGCAATGACG TGAATTCCCA CCGCGAGTGG  CTGGGCGACA TCGAGAGCTA CTGCCCGGAG ACCAAGGTGA AATACCCTAT CGTCGCCGAC CCAAGCCGCG ATCTGGCCGT CCGATTCGGG ATGCTCGACC CCGTGGAGAA GGATGCCGCG  GGGATGCCGC TGACGTGTCG CGCGTGCTTC GTGATTGGCC CGGACAAGAG GGTACGGCTG TCTATCCTCT ACCCGGCCAG TACGGGCAGG AACTTTAGCG AGCTCGTGCG CGTGATCGAT  TCCCTGCAGC TCACGGATAA GTTTAGCGTG GCCACGCCCG CGAACTGGGA GAATGGGAGG AAGTGTATGA TTCTTCCCAC TATCTCGGAC GAGAAGGCCA AGGAGATGTT TCCAAAAGGA 
TTCGACACCG TCAAAGTTCC ATCTGGCAAG GCCTACATCC GTCTCGTGGA GCAGCCAACT CTCTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTCTGA ATTTGGGCGA CATTGTGCCG GATTTCAAGG CGGAATCCAC AATGGGAACC ATCAAATTCC ACGAGTATAT CAACGGCAGC TGGGCGATTC TCCTCTCCCA CCCCAGCGAT  TTCACGCCCG TGTGCACGTC GGAGCTGGGC TCCCTGGCGT CGCGCATCCA CGAATTCGAT CGCCGCGGCG TCAAGGTGAT TGCTCTCAGC TGCAATGACG TGAATTCCCA CCGCGAGTGG  CTGGGCGACA TCGAGAGCTA CTGCCCGGAG ACCAAGGTGA AATACCCTAT CGTCGCCGAC CCAAGCCGCG ATCTGGCCGT CCGATTCGGG ATGCTCGACC CCGTGGAGAA GGATGCCGCG  GGGATGCCGC TGACGTGTCG CGCGTGCTTC GTGATTGGCC CGGACAAGAG GGTACGGCTG TCTATCCTCT ACCCGGCCAG TACGGGCAGG AACTTTAGCG AGCTCGTGCG CGTGATCGAT  TCCCTGCAGC TCACGGATAA GTTTAGCGTG GCCACGCCCG CGAACTGGGA GAATGGGAGG AAGTGTATGA TTCTTCCCAC TATCTCGGAC GAGAAGGCCA AGGAGATGTT TCCAAAAGGA 
TTCGACACCG TCAAAGTTCC ATCTGGCAAG GCCTACATCC GTCTCGTGGA GCAGCCAACT CTCTAG 

Retrieve as FASTA