Entry information : LinfAPx-CcP
Entry ID 6389
Creation 2008-10-17 (Marcel Zamocky)
Last sequence changes 2012-05-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-05-24 (Christophe Dunand)
Peroxidase information: LinfAPx-CcP
Name LinfAPx-CcP
Class Hybrid Ascorbate-Cytochrome C peroxidase    [Orthogroup: APx-CcP001]
Taxonomy Eukaryota Trypanosomatidae Leishmania
Organism Leishmania infantum    [TaxId: 5671 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LinfAPx-CcP
start..stop
S start..stop
LdonAPx-CcP01 633 0 1..303 1..303
LmAPx-CcP 610 0 1..303 1..303
LmexAPx-CcP01 587 0 1..303 1..303
LbraAPx-CcP 554 0 1..300 1..302
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 23760..24671 912  
join(23760..24671)


exon

Literature and cross-references LinfAPx-CcP
Literature REFERENCE 1 Peacock C.S., Seeger K., Harris D., Murphy L., Ruiz J.C., Quail M.A., Peters N., Adlem E., Tivey A., Aslett M., Kerhornou A., Ivens A., Fraser A., Rajandream M.A., Carver T., Norbertczak H., Chillingworth T., Hance Z., Jagels K., , Berriman M. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat. Genet. 39:839-847(2007).

REFERENCE 2 Peacock,C.S.,et al., Analysis of genome architecture and content between three Leishmania species causing diverse human disease reveals only a small subset of species-specific genes. (unpublished in 2008)
Protein ref. UniProtKB:   A4I9H5
DNA ref. GenBank:   NC_009418.2 (23760..24671)
mRNA ref. GenBank:   XM_001468357
Protein sequence: LinfAPx-CcP
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   303
PWM (Da):   %s   33601.79 Transmb domain:   %s   i12-34o
PI (pH):   %s   7.79
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSGTSRRAKG LFTGIAVGTF VSGAMFVSCA SARVEEPPFD IRALRADIES MISDKLELGP SLIRLAWHEA ASYDCFKKDG SPNSASMRFK PECLYEGNKG LDIPRKALEP LKKKYPQISY  ADLWVLAAYV AIEYMGGPTI PFCWGRVDAK DGSVCGPDGR LPDGSKTQSH VREVFTRLGF NDQETVALIG AHTCGECHIK FSGYHGPWTH DKNGFDNSFF TQLLDEDWVL NPKVEKMQLM 
DRATTKLMML PSDVSLLLDP GYRKYVELYA KDNDRFNKDF ANAFKKLTEL GTKNLHRAPA SGS 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 34, no intron). Strain="JPCM5".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCGGCA CCTCTCGGCG AGCGAAAGGC CTCTTTACCG GCATCGCTGT TGGCACCTTC GTGAGTGGTG CCATGTTTGT TTCCTGCGCC AGCGCACGCG TGGAGGAGCC GCCGTTCGAC  ATCCGGGCTC TCCGCGCCGA CATTGAGAGC ATGATCTCTG ACAAGCTGGA ACTCGGACCT TCGCTGATTC GCCTCGCATG GCACGAGGCC GCTTCGTACG ACTGCTTCAA GAAGGATGGC  TCTCCGAACT CAGCGTCGAT GCGCTTCAAA CCGGAGTGCC TGTACGAGGG TAACAAAGGT CTCGACATCC CTCGCAAGGC GCTGGAGCCG TTGAAGAAGA AGTACCCGCA AATATCTTAC  GCGGATTTGT GGGTGCTCGC CGCCTACGTG GCCATCGAGT ACATGGGTGG TCCCACGATT CCGTTCTGCT GGGGTCGGGT GGATGCCAAG GATGGCTCTG TGTGTGGACC TGACGGGCGC  CTGCCGGACG GCTCAAAGAC GCAAAGTCAC GTGCGCGAGG TGTTCACGCG TCTCGGGTTC AATGACCAGG AGACAGTGGC GCTCATCGGC GCGCACACGT GCGGTGAGTG CCACATCAAA  TTCTCCGGCT ACCATGGACC GTGGACGCAC GACAAGAACG GTTTCGACAA CTCCTTCTTT ACGCAGTTGC TCGATGAGGA TTGGGTCTTG AATCCGAAGG TTGAGAAGAT GCAGCTGATG  GACCGCGCGA CGACGAAGCT GATGATGCTT CCCAGTGACG TTTCCCTCCT CCTCGATCCC GGCTACCGCA AGTACGTGGA GCTGTACGCA AAGGACAACG ACCGCTTCAA CAAAGACTTT 
GCGAATGCGT TCAAAAAGCT GACCGAGCTC GGCACCAAGA ACCTTCACAG AGCCCCCGCT TCGGGGAGCT AA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCGGCA CCTCTCGGCG AGCGAAAGGC CTCTTTACCG GCATCGCTGT TGGCACCTTC GTGAGTGGTG CCATGTTTGT TTCCTGCGCC AGCGCACGCG TGGAGGAGCC GCCGTTCGAC  ATCCGGGCTC TCCGCGCCGA CATTGAGAGC ATGATCTCTG ACAAGCTGGA ACTCGGACCT TCGCTGATTC GCCTCGCATG GCACGAGGCC GCTTCGTACG ACTGCTTCAA GAAGGATGGC  TCTCCGAACT CAGCGTCGAT GCGCTTCAAA CCGGAGTGCC TGTACGAGGG TAACAAAGGT CTCGACATCC CTCGCAAGGC GCTGGAGCCG TTGAAGAAGA AGTACCCGCA AATATCTTAC  GCGGATTTGT GGGTGCTCGC CGCCTACGTG GCCATCGAGT ACATGGGTGG TCCCACGATT CCGTTCTGCT GGGGTCGGGT GGATGCCAAG GATGGCTCTG TGTGTGGACC TGACGGGCGC  CTGCCGGACG GCTCAAAGAC GCAAAGTCAC GTGCGCGAGG TGTTCACGCG TCTCGGGTTC AATGACCAGG AGACAGTGGC GCTCATCGGC GCGCACACGT GCGGTGAGTG CCACATCAAA  TTCTCCGGCT ACCATGGACC GTGGACGCAC GACAAGAACG GTTTCGACAA CTCCTTCTTT ACGCAGTTGC TCGATGAGGA TTGGGTCTTG AATCCGAAGG TTGAGAAGAT GCAGCTGATG  GACCGCGCGA CGACGAAGCT GATGATGCTT CCCAGTGACG TTTCCCTCCT CCTCGATCCC GGCTACCGCA AGTACGTGGA GCTGTACGCA AAGGACAACG ACCGCTTCAA CAAAGACTTT 
GCGAATGCGT TCAAAAAGCT GACCGAGCTC GGCACCAAGA ACCTTCACAG AGCCCCCGCT TCGGGGAGCT AA 

Retrieve as FASTA