Entry information : LbraAPx-CcP
Entry ID 6390
Creation 2008-10-17 (Marcel Zamocky)
Last sequence changes 2012-05-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-05-24 (Christophe Dunand)
Peroxidase information: LbraAPx-CcP
Name LbraAPx-CcP
Class Hybrid Ascorbate-Cytochrome C peroxidase    [Orthogroup: APx-CcP001]
Taxonomy Eukaryota Trypanosomatidae Leishmania
Organism Leishmania braziliensis    [TaxId: 5660 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LbraAPx-CcP
start..stop
S start..stop
LinfAPx-CcP 554 0 1..302 1..300
LdonAPx-CcP01 554 0 1..302 1..300
LmexAPx-CcP01 547 0 1..302 1..300
LmAPx-CcP 541 0 1..304 1..302
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 48874..49791 918  
join(48874..49791)


exon

Literature and cross-references LbraAPx-CcP
Literature Peacock C.S., Seeger K., Harris D., Murphy L., Ruiz J.C., Quail M.A., Peters N., Adlem E., Tivey A., Aslett M., Kerhornou A., Ivens A., Fraser A., Rajandream M.A., Carver T., Norbertczak H., Chillingworth T., Hance Z., Jagels K., , Berriman M. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat. Genet. 39:839-847(2007).

Protein ref. GenBank:   XP_001564302 UniProtKB:   A4HAD2
DNA ref. GenBank:   FR798994.1 (48874..49791)
Protein sequence: LbraAPx-CcP
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   305
PWM (Da):   %s   33733.69 Transmb domain:   %s   i12-34o
PI (pH):   %s   7.81
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTGTSRRAKG LFAGIAAGSF VSGAMIVSCA SFGSRANEPP FDIKSLRSDI EAMISDNLDL GPSLVRLAWH EAGSYDCFKK DGAPNSASMR FKPECQYEGN NGLEVPRRAL EPFKKKYPQI  SYADLWVLAA YVAIEYMGGP SIPFSWGRVD AKDGSVCGPD GRLPDGGKTQ DHVREVFTRL GFNDQETVAL IGAHTCGECH LKYSGFDGPW THDKNGFDNS FFTQLLSEEW VVNPKIQKMQ 
LMDRATTKLM MLPSDMSLIL DPKYRKYVEL YANDNDRFNK DFSAAFKKLT ELGTKNLRKA PAVEC 

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 20, no intron). Strain="MHOM/BR/75/M2904".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACCGGTA CCTCGCGGCG AGCGAAGGGG CTCTTTGCTG GCATCGCTGC CGGCTCCTTC GTGAGCGGTG CCATGATTGT TTCGTGTGCC AGCTTCGGCT CTCGGGCGAA TGAGCCGCCG  TTTGATATCA AGTCACTCCG TTCCGACATT GAGGCGATGA TTTCTGATAA TCTCGATCTT GGACCTTCGC TGGTTCGTCT CGCGTGGCAC GAGGCTGGCT CTTACGACTG CTTTAAGAAG  GACGGCGCTC CGAACTCGGC GTCGATGCGC TTCAAACCAG AGTGCCAATA CGAGGGTAAC AACGGTCTCG AAGTCCCTCG CAGGGCGCTG GAGCCGTTCA AGAAAAAGTA TCCGCAAATA  TCTTATGCAG ATTTGTGGGT GCTTGCCGCC TACGTGGCTA TTGAGTACAT GGGTGGTCCG AGTATTCCGT TCAGCTGGGG TCGCGTGGAT GCGAAGGACG GCTCTGTGTG CGGACCGGAC  GGGCGCCTGC CGGACGGTGG AAAGACGCAG GATCACGTGC GCGAGGTCTT CACGCGTCTC GGGTTCAATG ATCAGGAGAC GGTGGCGCTT ATCGGTGCGC ACACTTGCGG TGAGTGCCAC  CTCAAGTACT CCGGCTTCGA TGGGCCGTGG ACACACGACA AGAACGGGTT CGACAACTCC TTCTTCACGC AACTTCTCAG TGAGGAGTGG GTGGTGAATC CCAAGATCCA GAAGATGCAG  CTGATGGACC GCGCGACTAC GAAACTGATG ATGCTTCCCA GTGACATGTC CCTGATTCTC GACCCCAAGT ACCGCAAGTA CGTTGAGCTA TACGCAAACG ACAACGACCG CTTCAACAAA 
GATTTTTCCG CGGCGTTCAA GAAGTTGACG GAGCTGGGCA CCAAAAACCT TCGCAAAGCA CCGGCAGTGG AATGCTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACCGGTA CCTCGCGGCG AGCGAAGGGG CTCTTTGCTG GCATCGCTGC CGGCTCCTTC GTGAGCGGTG CCATGATTGT TTCGTGTGCC AGCTTCGGCT CTCGGGCGAA TGAGCCGCCG  TTTGATATCA AGTCACTCCG TTCCGACATT GAGGCGATGA TTTCTGATAA TCTCGATCTT GGACCTTCGC TGGTTCGTCT CGCGTGGCAC GAGGCTGGCT CTTACGACTG CTTTAAGAAG  GACGGCGCTC CGAACTCGGC GTCGATGCGC TTCAAACCAG AGTGCCAATA CGAGGGTAAC AACGGTCTCG AAGTCCCTCG CAGGGCGCTG GAGCCGTTCA AGAAAAAGTA TCCGCAAATA  TCTTATGCAG ATTTGTGGGT GCTTGCCGCC TACGTGGCTA TTGAGTACAT GGGTGGTCCG AGTATTCCGT TCAGCTGGGG TCGCGTGGAT GCGAAGGACG GCTCTGTGTG CGGACCGGAC  GGGCGCCTGC CGGACGGTGG AAAGACGCAG GATCACGTGC GCGAGGTCTT CACGCGTCTC GGGTTCAATG ATCAGGAGAC GGTGGCGCTT ATCGGTGCGC ACACTTGCGG TGAGTGCCAC  CTCAAGTACT CCGGCTTCGA TGGGCCGTGG ACACACGACA AGAACGGGTT CGACAACTCC TTCTTCACGC AACTTCTCAG TGAGGAGTGG GTGGTGAATC CCAAGATCCA GAAGATGCAG  CTGATGGACC GCGCGACTAC GAAACTGATG ATGCTTCCCA GTGACATGTC CCTGATTCTC GACCCCAAGT ACCGCAAGTA CGTTGAGCTA TACGCAAACG ACAACGACCG CTTCAACAAA 
GATTTTTCCG CGGCGTTCAA GAAGTTGACG GAGCTGGGCA CCAAAAACCT TCGCAAAGCA CCGGCAGTGG AATGCTAA 

Retrieve as FASTA