Entry information : Br1CysPrx-1Aa (Brara.E01852)
Entry ID 6401
Creation 2008-11-12 (Christophe Dunand)
Last sequence changes 2018-03-08 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2018-03-08 (Christophe Dunand)
Peroxidase information: Br1CysPrx-1Aa (Brara.E01852)
Name (synonym) Br1CysPrx-1Aa (Brara.E01852)
Class 1-Cysteine peroxiredoxin    [Orthogroup: 1CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Br1CysPrx-1Aa
start..stop
S start..stop
Bn1CysPrx-1A_other 445 3e-162 1..216 1..216
Bo1CysPrx01-1Ca 444 6e-162 1..216 1..216
Bo1CysPrx01-1Cb 444 1e-161 1..216 1..216
Bn1CysPrx-2A_other 431 1e-156 1..216 1..214
Literature and cross-references Br1CysPrx-1Aa (Brara.E01852)
Literature Lim,M.-H., Kim,J.-A., Jin,M., Kim,J., Lee,S.-I., Kwon,S.-J., Moon
,J.-H., Lee,S.-C., Kim,H.-I., Hahn,J.-H., Yang,T.-J., Lim,K.-B., Seol,Y.-J., Lim,C.O., Chung,Y.-Y., Hur,Y. and Park,B.-S. Brassica rapa ESTs KFSD.
EST ref. GenBank:   EX105975
Protein sequence: Br1CysPrx-1Aa (Brara.E01852)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   216
PWM (Da):   %s   23811.18  
PI (pH):   %s   5.89
Sequence
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Send to Peroxiscan
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MPGITLGDTV PNLEVETTHK NFKLHDYFAD SWTVLFSHPG DFTPVCTTEL GAMGKYAHEF EQRGVKLLGL SCDDIQSHKD WIPDIEAFTP GSKVTYPIIA DPNKEIIPQL NMVDPIENGP 
SRALHIVGPD CKIKLSFLYP STTGRNMDEV LRALDSLLMA AKHKNKIATP VNWKPDEPVV ISPAVSDEEA KKLFPQGFKT AELPSKKGYL RVADVS 

Retrieve as FASTA  
Remarks Complete sequence from genomic and 8 ESTs. Cultivar="FPsc" and "Chiifu".
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCCAGGGA TCACACTAGG AGACACGGTA CCAAACCTAG AGGTGGAGAC GACACACAAG AACTTCAAGC TCCATGACTA CTTCGCCGAT TCTTGGACCG TCCTCTTCTC TCACCCTGGT  ATATAAGAAC ATCCTTATAT CTTGACTAAC CCAGTCAAGT TTCGTTTTTT TCCTTAAATT GATCAAAATA TTTGAAGCAT CTCCAATTTA TTTACTCTCC TTATTGACCA ATGGACTCCA  AGGGGATTTC ACACCCGTAT GCACAACCGA GCTTGGTGCG ATGGGAAAAT ACGCTCATGA GTTCGAGCAG AGAGGTGTGA AGCTCCTTGG TTTGTCTTGT GACGACATAC AGTCGCACAA  AGATTGGATC CCCGACATTG AGGCATTTAC TGTAAGATTT AATTTCATGC ATGCATGATG CATATAATGT AAAACTAGTT AACATTTTGA CATACCTGTT ACGTTCTCGT TTTGATTAAT  TGCAACTAAC ATTGTGTTCT TCTTTTATTG TGGCTTATAA AATTGATATA GCCTGGAAGC AAAGTGACAT ACCCAATAAT CGCTGATCCG AACAAAGAGA TCATCCCTCA GCTTAACATG  GTTGATCCTA TTGAGAACGG TCCCTCTCGT GCCCTTCATA TAGTTGGTCC TGATTGCAAG GTAAATGATC ATATGTCATA ATTTCATTCT CATGTATTTT TGCATGTATA TATGATTAAT  TATGAATTTT TTTATAGATA AAGTTGAGTT TCCTGTATCC GTCCACCACG GGACGTAACA TGGACGAAGT GCTGAGGGCT TTAGACTCGT TGTTGATGGC GGCCAAACAT AAGAACAAGA  TTGCCACTCC GGTTAACTGG AAACCAGATG AACCGGTTGT TATCTCACCA GCTGTGTCAG ACGAAGAGGC TAAGAAGTTG TTTCCTCAGG GTTTCAAGAC TGCCGAACTT CCGTCCAAGA 
AAGGCTACCT ACGTGTCGCC GATGTCTCTT GA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCCAGGGA TCACACTAGG AGACACGGTA CCAAACCTAG AGGTGGAGAC GACACACAAG AACTTCAAGC TCCATGACTA CTTCGCCGAT TCTTGGACCG TCCTCTTCTC TCACCCTGGG  GATTTCACAC CCGTATGCAC AACCGAGCTT GGTGCGATGG GAAAATACGC TCATGAGTTC GAGCAGAGAG GTGTGAAGCT CCTTGGTTTG TCTTGTGACG ACATACAGTC GCACAAAGAT  TGGATCCCCG ACATTGAGGC ATTTACTCCT GGAAGCAAAG TGACATACCC AATAATCGCT GATCCGAACA AAGAGATCAT CCCTCAGCTT AACATGGTTG ATCCTATTGA GAACGGTCCC  TCTCGTGCCC TTCATATAGT TGGTCCTGAT TGCAAGATAA AGTTGAGTTT CCTGTATCCG TCCACCACGG GACGTAACAT GGACGAAGTG CTGAGGGCTT TAGACTCGTT GTTGATGGCG  GCCAAACATA AGAACAAGAT TGCCACTCCG GTTAACTGGA AACCAGATGA ACCGGTTGTT ATCTCACCAG CTGTGTCAGA CGAAGAGGCT AAGAAGTTGT TTCCTCAGGG TTTCAAGACT 
GCCGAACTTC CGTCCAAGAA AGGCTACCTA CGTGTCGCCG ATGTCTCTTG A 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCCAGGGA TCACACTAGG AGACACGGTA CCAAACCTAG AGGTGGAGAC GACACACAAG AACTTCAAGC TCCATGACTA CTTCGCCGAT TCTTGGACCG TCCTCTTCTC TCACCCTGGG  GATTTCACAC CCGTATGCAC AACCGAGCTT GGTGCGATGG GAAAATACGC TCATGAGTTC GAGCAGAGAG GTGTGAAGCT CCTTGGTTTG TCTTGTGACG ACATACAGTC GCACAAAGAT  TGGATCCCCG ACATTGAGGC ATTTACTCCT GGAAGCAAAG TGACATACCC AATAATCGCT GATCCGAACA AAGAGATCAT CCCTCAGCTT AACATGGTTG ATCCTATTGA GAACGGTCCC  TCTCGTGCCC TTCATATAGT TGGTCCTGAT TGCAAGATAA AGTTGAGTTT CCTGTATCCG TCCACCACGG GACGTAACAT GGACGAAGTG CTGAGGGCTT TAGACTCGTT GTTGATGGCG  GCCAAACATA AGAACAAGAT TGCCACTCCG GTTAACTGGA AACCAGATGA ACCGGTTGTT ATCTCACCAG CTGTGTCAGA CGAAGAGGCT AAGAAGTTGT TTCCTCAGGG TTTCAAGACT 
GCCGAACTTC CGTCCAAGAA AGGCTACCTA CGTGTCGCCG ATGTCTCTTG A 

Retrieve as FASTA