Entry information : SbPrx114 (Sobic.009G033500.1 [2.1] / SB09G002830 [1.4])
Entry ID 6402
Creation 2008-11-19 (Christophe Dunand)
Last sequence changes 2008-11-19 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx114 (Sobic.009G033500.1 [2.1] / SB09G002830 [1.4])
Name (synonym) SbPrx114 (Sobic.009G033500.1 [2.1] / SB09G002830 [1.4])
Class Class III peroxidase    [Orthogroup: Prx017]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx114
start..stop
S start..stop
SbPrx87 592 0 3..343 2..339
SbPrx112 583 0 39..343 28..332
ZmPrx22 577 0 3..343 2..337
ZmPrx146 577 0 3..343 2..337
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3064717..3065748 1032  
join(3064717..3065748)


exon

Literature and cross-references SbPrx114 (Sobic.009G033500.1 [2.1] / SB09G002830 [1.4])
Literature JGI.
DNA ref. Phytozome 12:   chromosome_9 (3064717..3065748)
Protein sequence: SbPrx114 (Sobic.009G033500.1 [2.1] / SB09G002830 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   343 (322)
PWM (Da):   %s   36919.44 (34690.2) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.54 (7.31) Peptide Signal:   %s   cut: 22 range:22-343
Sequence
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Send to Peroxiscan
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MSRSTWLAFA WAAALVVVVV AASTTTTAHA SHHASLEVGF YKHSCPEAES IVRDAVRRGV ARDAGVGAGL IRMQFHDCFV RGCDASILIN STPGNKAEKD SVANNPSMRG FDVVDDAKAV  LEAHCPRTVS CADIVAFAAR DGAYLAGGLD YKVPSGRRDG RVSREDEVLD SNVPAPFDDV AELIQSFKRK GLTADDMVTL SGAHTIGRSH CSSFTQRLYN FSGQLGRTDP SLDVAYADHL 
KMRCPWPSSD GKRHPAVVPQ DPVTPATFDN QYFKNVVAHK GLFVSDKTLL DSTCTAGIVH FNAAVDKAWQ VKFAKAMVKM GKIQVLTGDE GEIREKCFVV NPH 

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Remarks Complete sequence from genomic (chromo 9, no intron). No EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCCGCT CGACATGGCT GGCTTTTGCA TGGGCGGCGG CCCTCGTCGT CGTCGTCGTG GCGGCGTCCA CGACGACGAC GGCACACGCC TCGCACCACG CGTCGCTGGA GGTCGGTTTC  TACAAGCACT CGTGCCCAGA GGCCGAGTCC ATCGTGCGCG ACGCCGTCCG CCGCGGCGTC GCCCGCGACG CCGGCGTCGG CGCGGGGCTC ATCCGGATGC AGTTCCACGA CTGCTTCGTC  CGGGGCTGCG ACGCCTCCAT CCTCATCAAC TCCACGCCGG GCAACAAAGC CGAGAAGGAC TCCGTCGCCA ACAACCCCAG CATGCGCGGC TTCGACGTCG TCGACGACGC CAAGGCCGTC  CTCGAGGCGC ACTGCCCGCG CACCGTCTCC TGCGCCGACA TCGTCGCGTT CGCCGCCCGC GACGGCGCCT ACCTCGCCGG CGGCCTCGAC TACAAGGTCC CCTCGGGACG CCGCGACGGC  CGCGTGTCCA GAGAAGACGA GGTGCTCGAC AGCAACGTCC CCGCACCGTT CGACGACGTC GCCGAGCTCA TCCAGAGCTT CAAGCGCAAG GGCCTCACCG CCGACGACAT GGTCACGCTC  TCCGGCGCGC ACACCATCGG CCGCTCCCAC TGCTCCTCCT TCACGCAGCG GCTCTACAAC TTCAGCGGGC AACTGGGGCG GACGGACCCG TCGCTCGACG TCGCCTACGC CGACCACCTC  AAGATGCGGT GCCCATGGCC GTCCAGCGAC GGCAAGAGGC ACCCCGCGGT GGTGCCGCAG GACCCTGTCA CGCCGGCGAC CTTCGACAAC CAGTACTTCA AGAACGTGGT GGCGCACAAG  GGCCTGTTCG TCTCCGACAA GACGCTGCTC GACAGCACCT GCACGGCTGG GATCGTCCAC TTCAACGCCG CAGTCGACAA GGCATGGCAG GTCAAGTTCG CCAAGGCCAT GGTGAAGATG 
GGCAAGATCC AGGTGCTCAC CGGCGATGAG GGAGAGATCA GGGAGAAGTG CTTCGTCGTC AACCCACACT AG 

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CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCCGCT CGACATGGCT GGCTTTTGCA TGGGCGGCGG CCCTCGTCGT CGTCGTCGTG GCGGCGTCCA CGACGACGAC GGCACACGCC TCGCACCACG CGTCGCTGGA GGTCGGTTTC  TACAAGCACT CGTGCCCAGA GGCCGAGTCC ATCGTGCGCG ACGCCGTCCG CCGCGGCGTC GCCCGCGACG CCGGCGTCGG CGCGGGGCTC ATCCGGATGC AGTTCCACGA CTGCTTCGTC  CGGGGCTGCG ACGCCTCCAT CCTCATCAAC TCCACGCCGG GCAACAAAGC CGAGAAGGAC TCCGTCGCCA ACAACCCCAG CATGCGCGGC TTCGACGTCG TCGACGACGC CAAGGCCGTC  CTCGAGGCGC ACTGCCCGCG CACCGTCTCC TGCGCCGACA TCGTCGCGTT CGCCGCCCGC GACGGCGCCT ACCTCGCCGG CGGCCTCGAC TACAAGGTCC CCTCGGGACG CCGCGACGGC  CGCGTGTCCA GAGAAGACGA GGTGCTCGAC AGCAACGTCC CCGCACCGTT CGACGACGTC GCCGAGCTCA TCCAGAGCTT CAAGCGCAAG GGCCTCACCG CCGACGACAT GGTCACGCTC  TCCGGCGCGC ACACCATCGG CCGCTCCCAC TGCTCCTCCT TCACGCAGCG GCTCTACAAC TTCAGCGGGC AACTGGGGCG GACGGACCCG TCGCTCGACG TCGCCTACGC CGACCACCTC  AAGATGCGGT GCCCATGGCC GTCCAGCGAC GGCAAGAGGC ACCCCGCGGT GGTGCCGCAG GACCCTGTCA CGCCGGCGAC CTTCGACAAC CAGTACTTCA AGAACGTGGT GGCGCACAAG  GGCCTGTTCG TCTCCGACAA GACGCTGCTC GACAGCACCT GCACGGCTGG GATCGTCCAC TTCAACGCCG CAGTCGACAA GGCATGGCAG GTCAAGTTCG CCAAGGCCAT GGTGAAGATG 
GGCAAGATCC AGGTGCTCAC CGGCGATGAG GGAGAGATCA GGGAGAAGTG CTTCGTCGTC AACCCACACT AG 

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