Entry information : PiCP02
Entry ID 6404
Creation 2008-11-25 (Christophe Dunand)
Last sequence changes 2012-01-03 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-01-03 (Christophe Dunand)
Peroxidase information: PiCP02
Name PiCP02
Class Catalase peroxidase    [Orthogroup: CP002]
Taxonomy Eukaryota Phytophthora
Organism Phytophthora infestans    [TaxId: 4787 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PiCP02
start..stop
S start..stop
PcapCP02 1311 0 1..687 1..687
PsojCP03 1308 0 1..687 1..687
PraCP02 1282 0 1..687 1..687
PiCP[P]02 1248 0 2..687 1..688
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 169926..171989 2064  
join(169926..171989)


exon

Literature and cross-references PiCP02
Literature Nusbaum,C et al., The Broad Institute Genome Sequencing Platform. The Genome Sequence of Phytophthora infestans T30-4
Protein ref. UniProtKB:   D0N359
DNA ref. GenBank:   AATU01001356 (169926..171989)
EST ref. UniGene:   Pin.6472 [Mismatch]
Protein sequence: PiCP02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   687 (666)
PWM (Da):   %s   74014 (71893.9)  
PI (pH):   %s   4.43 (4.42) Peptide Signal:   %s   cut: 22 range:22-687
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MNIRLASFVA AFASLPSDAS AGSCPFGYDS VAAVHQVDRQ ISNELYDAQN CDVIDYELVK EDLLHLMTDS QDFWPADFGH YGGLFIRLAW HCNGSYRRAD GRGGCDGGRI RFNPERSWAD  NTNLDKALDL LEPIKLKYGD ALSWGDLIVL SGDVAIESMG GPVLGFCGGR RDDADGTSSL QLGPTPEQES VAPCAVDGQC KEPLGATTMG LIYVNPEGPM GNPDPVGSVA DVRDTFERMG  MNDRETVALI GGGHAFGKTH GACPTGPGPD PTQDPLNPWP GTCGEGTLKG KGNNTFTSGF EGAWTFTPTK WGNGYFKGLT SLEWEKFDGP GGHVQWRPVP DTTPPVRMLT ADIALLHDPS  YHNISLEFAT NQTALDEEFS HAWYKLMSRD VGPVARCRGN NVPPAQPFQN PLPPTPATLP DFGAVHSDIR SLLTTSVDGL TSDSSNDGTP YNGALFVHAA WQCASTFRIT DYAGGCNGAR  IRFLPEKDWP VNAGVDQIIA ALEPVKESYP TLSTADLIVL AGQVALEDAG NVTIDFVGGR TDAENGNGTE ILAPRQYYNT TLIAVRDNIK ILGVSPYEAV ALAGRPRSVA QQKILGYSGS 
YSNNSLTLSN EYFQILLNET WTEVSEKEFK ADGKDVYMMD TDLALLAAPE LKEAVQLFAS EENVFKHVFS SAWARVMTAD HFNSSSY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (1 intron) and ESTs (mismatches: Strain="88069"). Tandem with PiCP[P]02 (pseudogene). Strain="T30-4". Uncorrect prediction due to sequencing error (1 intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACATTC GCCTCGCCTC CTTCGTTGCC GCATTCGCAA GTCTGCCCAG TGACGCCAGC GCTGGTAGCT GTCCGTTCGG ATACGACTCA GTCGCCGCTG TGCACCAGGT GGACCGCCAG  ATTTCAAACG AGCTTTACGA CGCTCAAAAC TGCGATGTCA TCGACTACGA GCTCGTGAAG GAGGATCTCC TGCATCTGAT GACAGACTCG CAGGACTTCT GGCCCGCCGA CTTCGGCCAC  TACGGTGGTC TTTTCATCCG TTTGGCGTGG CACTGCAATG GATCATACCG CCGCGCCGAC GGCCGCGGTG GCTGCGACGG TGGTCGCATC CGCTTCAACC CGGAACGCAG TTGGGCCGAC  AACACCAATC TGGACAAGGC GCTCGACTTG TTGGAGCCCA TCAAACTCAA GTACGGCGAC GCGTTGTCGT GGGGTGATCT CATCGTGCTG TCAGGCGACG TCGCTATCGA GAGCATGGGT  GGCCCTGTGC TGGGTTTCTG TGGCGGTCGC CGCGACGACG CTGACGGTAC GAGTAGTCTA CAACTGGGCC CGACGCCCGA GCAGGAGAGT GTCGCTCCGT GCGCCGTGGA CGGCCAGTGC  AAGGAGCCTC TGGGGGCCAC TACCATGGGT CTTATCTACG TGAACCCCGA GGGCCCCATG GGCAACCCCG ACCCGGTTGG ATCGGTGGCC GATGTGCGCG ATACATTCGA GCGCATGGGC  ATGAACGACC GCGAGACGGT TGCGCTGATC GGCGGCGGGC ACGCCTTCGG CAAAACGCAC GGCGCCTGTC CGACAGGCCC TGGGCCCGAT CCGACACAAG ACCCTCTGAA CCCCTGGCCG  GGAACCTGCG GTGAGGGCAC GCTCAAGGGC AAGGGAAACA ACACGTTCAC GAGCGGCTTC GAAGGCGCAT GGACATTCAC GCCTACCAAG TGGGGCAACG GCTACTTCAA GGGTCTCACT  AGCCTTGAGT GGGAGAAGTT CGACGGCCCC GGTGGCCATG TGCAATGGCG TCCCGTTCCT GATACGACGC CGCCCGTGCG CATGCTGACT GCCGACATTG CCCTGCTGCA CGACCCGAGC  TATCACAACA TCTCACTCGA GTTTGCTACC AACCAGACCG CCTTGGACGA GGAATTCTCG CACGCCTGGT ACAAACTGAT GTCGCGCGAT GTGGGCCCAG TGGCTCGCTG TCGCGGTAAC  AACGTGCCGC CCGCTCAGCC ATTCCAGAAC CCGTTGCCGC CAACACCCGC TACGTTGCCG GACTTCGGTG CCGTGCATTC GGACATCCGT TCGCTGCTGA CCACGTCCGT GGACGGTCTG  ACAAGCGACT CGAGCAATGA CGGCACGCCG TACAACGGTG CTCTGTTCGT GCATGCTGCG TGGCAGTGCG CTTCGACGTT CCGTATCACG GACTACGCCG GCGGCTGCAA CGGCGCTCGC  ATCCGCTTCT TGCCAGAAAA GGACTGGCCG GTGAACGCAG GTGTGGACCA GATCATCGCT GCGCTTGAGC CTGTAAAGGA ATCGTACCCG ACGCTGTCGA CGGCCGACCT GATCGTGCTG  GCGGGCCAGG TGGCCCTGGA GGATGCAGGC AACGTGACCA TCGACTTCGT GGGTGGCCGT ACAGACGCTG AGAACGGCAA CGGCACGGAA ATTCTGGCTC CGCGTCAGTA CTACAACACG  ACCCTGATCG CCGTGCGTGA CAACATCAAG ATTCTCGGCG TGTCTCCGTA CGAAGCGGTC GCTTTGGCTG GCCGTCCACG CAGCGTGGCG CAGCAGAAGA TTCTGGGCTA CAGCGGCTCG  TACAGCAACA ACTCGCTCAC GCTATCGAAC GAGTACTTCC AGATTCTCCT GAACGAGACG TGGACGGAGG TGTCCGAGAA GGAGTTCAAG GCGGACGGCA AGGACGTGTA CATGATGGAC  ACGGATCTGG CGTTGTTGGC GGCTCCCGAG CTTAAGGAGG CAGTGCAGCT GTTTGCGTCG GAGGAGAACG TCTTCAAGCA CGTATTCTCT TCGGCCTGGG CCAGGGTAAT GACGGCCGAC 
CATTTCAACT CGAGCAGCTA CTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACATTC GCCTCGCCTC CTTCGTTGCC GCATTCGCAA GTCTGCCCAG TGACGCCAGC GCTGGTAGCT GTCCGTTCGG ATACGACTCA GTCGCCGCTG TGCACCAGGT GGACCGCCAG  ATTTCAAACG AGCTTTACGA CGCTCAAAAC TGCGATGTCA TCGACTACGA GCTCGTGAAG GAGGATCTCC TGCATCTGAT GACAGACTCG CAGGACTTCT GGCCCGCCGA CTTCGGCCAC  TACGGTGGTC TTTTCATCCG TTTGGCGTGG CACTGCAATG GATCATACCG CCGCGCCGAC GGCCGCGGTG GCTGCGACGG TGGTCGCATC CGCTTCAACC CGGAACGCAG TTGGGCCGAC  AACACCAATC TGGACAAGGC GCTCGACTTG TTGGAGCCCA TCAAACTCAA GTACGGCGAC GCGTTGTCGT GGGGTGATCT CATCGTGCTG TCAGGCGACG TCGCTATCGA GAGCATGGGT  GGCCCTGTGC TGGGTTTCTG TGGCGGTCGC CGCGACGACG CTGACGGTAC GAGTAGTCTA CAACTGGGCC CGACGCCCGA GCAGGAGAGT GTCGCTCCGT GCGCCGTGGA CGGCCAGTGC  AAGGAGCCTC TGGGGGCCAC TACCATGGGT CTTATCTACG TGAACCCCGA GGGCCCCATG GGCAACCCCG ACCCGGTTGG ATCGGTGGCC GATGTGCGCG ATACATTCGA GCGCATGGGC  ATGAACGACC GCGAGACGGT TGCGCTGATC GGCGGCGGGC ACGCCTTCGG CAAAACGCAC GGCGCCTGTC CGACAGGCCC TGGGCCCGAT CCGACACAAG ACCCTCTGAA CCCCTGGCCG  GGAACCTGCG GTGAGGGCAC GCTCAAGGGC AAGGGAAACA ACACGTTCAC GAGCGGCTTC GAAGGCGCAT GGACATTCAC GCCTACCAAG TGGGGCAACG GCTACTTCAA GGGTCTCACT  AGCCTTGAGT GGGAGAAGTT CGACGGCCCC GGTGGCCATG TGCAATGGCG TCCCGTTCCT GATACGACGC CGCCCGTGCG CATGCTGACT GCCGACATTG CCCTGCTGCA CGACCCGAGC  TATCACAACA TCTCACTCGA GTTTGCTACC AACCAGACCG CCTTGGACGA GGAATTCTCG CACGCCTGGT ACAAACTGAT GTCGCGCGAT GTGGGCCCAG TGGCTCGCTG TCGCGGTAAC  AACGTGCCGC CCGCTCAGCC ATTCCAGAAC CCGTTGCCGC CAACACCCGC TACGTTGCCG GACTTCGGTG CCGTGCATTC GGACATCCGT TCGCTGCTGA CCACGTCCGT GGACGGTCTG  ACAAGCGACT CGAGCAATGA CGGCACGCCG TACAACGGTG CTCTGTTCGT GCATGCTGCG TGGCAGTGCG CTTCGACGTT CCGTATCACG GACTACGCCG GCGGCTGCAA CGGCGCTCGC  ATCCGCTTCT TGCCAGAAAA GGACTGGCCG GTGAACGCAG GTGTGGACCA GATCATCGCT GCGCTTGAGC CTGTAAAGGA ATCGTACCCG ACGCTGTCGA CGGCCGACCT GATCGTGCTG  GCGGGCCAGG TGGCCCTGGA GGATGCAGGC AACGTGACCA TCGACTTCGT GGGTGGCCGT ACAGACGCTG AGAACGGCAA CGGCACGGAA ATTCTGGCTC CGCGTCAGTA CTACAACACG  ACCCTGATCG CCGTGCGTGA CAACATCAAG ATTCTCGGCG TGTCTCCGTA CGAAGCGGTC GCTTTGGCTG GCCGTCCACG CAGCGTGGCG CAGCAGAAGA TTCTGGGCTA CAGCGGCTCG  TACAGCAACA ACTCGCTCAC GCTATCGAAC GAGTACTTCC AGATTCTCCT GAACGAGACG TGGACGGAGG TGTCCGAGAA GGAGTTCAAG GCGGACGGCA AGGACGTGTA CATGATGGAC  ACGGATCTGG CGTTGTTGGC GGCTCCCGAG CTTAAGGAGG CAGTGCAGCT GTTTGCGTCG GAGGAGAACG TCTTCAAGCA CGTATTCTCT TCGGCCTGGG CCAGGGTAAT GACGGCCGAC 
CATTTCAACT CGAGCAGCTA CTAA 

Retrieve as FASTA