Entry information : BnPrx13-1_other
Entry ID 6413
Creation 2010-05-10 (Christophe Dunand)
Last sequence changes 2010-05-10 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2010-05-10 (Christophe Dunand)
Peroxidase information: BnPrx13-1_other
Name BnPrx13-1_other
Class Class III peroxidase     [Orthogroup: Prx017]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue types Seed coats
Seeds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnPrx13-1_other
start..stop
S start..stop
BrPrx13-1Ab_other 642 0 1..320 1..320
TsPrx13 523 0 1..320 1..319
BstrPrx54 511 0 1..320 1..319
AtPrx13 508 0 1..320 1..319
Literature and cross-references BnPrx13-1_other
Literature REFRENCE 1 Selvaraj,G., Kurylo,E., Hirji,R. and Datla,R. Transcriptome analysis of early seed development in canola.
REFERENCE 2 Kurylo,E., Datla,R. and Selvaraj,G. Seed coat expressed sequences in Brassica napus.
EST ref. GenBank:   FG563035.1 [5' end]
Cluster/Prediction ref. UniGene:   Bna.18256 [5' end]
Protein sequence: BnPrx13-1_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320
PWM (Da):   %s   35007.52 Transmb domain:   %s   i13-35o
PI (pH):   %s   4.81
Sequence
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Send to Peroxiscan
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MSRGVRESIS KHSFSSRMII IGIFLVLFSA HDLFSFSEAQ QLQFGFYSET CPSAESIVGD VVKQAVTKDP RDAAVLLRLH FHDCFVEGCD GSILIKHEVN DDERFAPGNA GVGGFDVIDN  AKSELERLCP GVVSCADIVA LAARNAVVAA KGPFYEVPTG RRDGLTSDKS NAANLPDVED SINILKSKFR EKGLSDKDFV LLSAGAHTIG TTACFFIMSR LDAQDSTISP EFFQVLRSKC 
PKRGDVNIRI PLDWESQFVF DEQIFRNIRD GKGVIKSDSV LYQDNDMKNI IESYLASNES SEANFAADFA EAMVKMGVIG 

Retrieve as FASTA  
Remarks Partial sequence from 9 ESTs. Short 3' end is missing.
cDNA
Send to BLAST
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GCAACTTACC TTAAACTTAA ATGATCAATA TAAAACAAAA AATGAGCCGT GGAGTACGAG AGAGTATATC GAAGCATTCA TTTAGTTCGA GAATGATCAT TATTGGAATC TTTCTAGTTT  TGTTTTCTGC TCATGATCTA TTCAGTTTTT CAGAGGCACA ACAACTCCAG TTTGGGTTCT ACTCAGAAAC ATGTCCATCC GCAGAATCCA TCGTCGGTGA CGTTGTTAAA CAAGCAGTGA  CCAAGGACCC TAGAGATGCT GCTGTCTTAC TCCGTCTCCA CTTCCATGAT TGCTTTGTTG AGGGTTGTGA TGGGTCTATT CTTATCAAAC ACGAAGTAAA TGATGACGAG AGGTTTGCTC  CGGGTAACGC TGGTGTGGGT GGTTTCGATG TTATAGATAA TGCCAAATCA GAGCTTGAAC GTTTGTGTCC AGGCGTTGTG TCTTGTGCTG ACATCGTTGC TCTTGCTGCT AGAAACGCTG  TCGTTGCGGC AAAAGGACCT TTTTACGAGG TTCCAACAGG TCGAAGAGAT GGCCTGACAT CAGATAAGAG TAACGCTGCT AACTTGCCAG ATGTTGAAGA TTCCATAAAC ATTTTAAAAT 
CAAAATTCAG AGAAAAGGGG CTTTCAGATA AAGATTTTGT TCTTCTTAGT GCTGGTGCAC ATACTATCGG TACTACAGCA TGTTTCTTTA TCATGTCACG TTTGGATGCT CAAGAT 

Retrieve as FASTA