Entry information : PviPrx01(Pavir.1KG293200)
Entry ID 6469
Creation 2009-01-12 (Christophe Dunand)
Last sequence changes 2009-01-12 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-10-09 (Christophe Dunand)
Peroxidase information: PviPrx01(Pavir.1KG293200)
Name PviPrx01(Pavir.1KG293200)
Class Class III peroxidase    [Orthogroup: Prx063]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Panicum
Organism Panicum virgatum    [TaxId: 38727 ]
Cellular localisation N/D
Tissue type Callus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PviPrx01
start..stop
S start..stop
SiPrx73 580 0 1..344 1..341
ZmPrx96 555 0 1..343 1..342
SbPrx79 536 0 20..341 22..347
TaPrx99-1A 399 8e-140 1..344 1..339
Literature and cross-references PviPrx01(Pavir.1KG293200)
Literature Lucas,S., Rokhsar,D., Wang,M., Lindquist,E.A., Tobias,C.M., Twigg ,P., Sarath,G., Anderson,O. and Vogel,K. DOE Joint Genome Institute Panicum virgatum EST project.
EST ref. GenBank:   FE615299.1 [5' end]   FE615300.1 [3' end]
Protein sequence: PviPrx01(Pavir.1KG293200)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   344 (318)
PWM (Da):   %s   36743.53 (34048.1)  
PI (pH):   %s   6.14 (5.75) Peptide Signal:   %s   cut: 27 range:27-344
Sequence
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Send to Peroxiscan
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MARLNAAALP LCVALLALCL AGQSAAGRYY SDKVQDKVRK EVEKAMAYNP SVGPALVRLV FHDCWVNGCD GSVLLDKTPT DGTNTEKKAV NNIGLAGFEV IDTIKQKVGA DASCADILAF  AGRDAADILS GGKIFYTIPG GRKDGVVSSA AAADANLPES TFDFDQLQTN FAATARNFTV EELVVLSGAH SIGVAHLSSY KDRLGGADAT PIDSDYQSAL TKATPPELLG KGQNPTLPNN 
PRDATAAFQK DAAYDPAAVG VSPTRGVLDN SYYHNNLINK VLFKSDWVLR TDSFAAGKLQ EYKDNAAEWN SDFAAAMVKL SSLPAQGRNL EIRKNCRFTN QQYY* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (intron 1) and 3 ESTs. Cultivar="Kanlow".
DNA
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ATGGCGAGGC TCAACGCCGC CGCGCTACCT CTGTGCGTGG CACTGCTCGC CCTCTGCCTC GCCGGGCAGT CGGCCGCCGG CCGCTACTAC TCGGACAAAG TCCAGGACAA GGTGAGGAAG  GAAGTGGAGA AGGCCATGGC GTACAACCCC AGCGTCGGCC CCGCCCTCGT CCGCTTGGTG TTCCATGACT GCTGGGTCAA TGTAAGTACG ACAGCCACCG CCACGTACAG ATTGCTCCAT  CATCATTCTG ATCATCAACT GATGCGTCAG AAATGGCTCG CCTCTCTCTC TATATATAGG GTTGTGATGG ATCCGTGCTC CTGGACAAGA CGCCCACCGA CGGCACCAAC ACCGAGAAGA  AGGCCGTCAA CAACATCGGC CTCGCCGGCT TCGAGGTCAT CGACACCATC AAGCAGAAGG TCGGCGCCGA CGCCTCCTGC GCCGACATCC TCGCCTTCGC GGGGCGCGAC GCGGCCGACA  TCCTCAGCGG CGGCAAGATC TTCTACACCA TCCCTGGCGG CCGCAAGGAC GGCGTCGTCT CCTCCGCCGC GGCCGCCGAC GCCAACCTCC CCGAGTCCAC CTTCGACTTC GACCAGCTGC  AGACCAACTT CGCCGCGACC GCCCGGAACT TCACCGTCGA GGAGCTCGTC GTCCTCTCCG GCGCGCACTC CATCGGCGTC GCGCACCTCT CGTCCTACAA GGACCGCCTC GGCGGCGCCG  ACGCCACGCC CATCGACTCC GACTACCAGT CGGCGCTCAC CAAGGCCACG CCGCCGGAGC TGCTGGGCAA AGGGCAGAAC CCGACCTTAC CCAACAACCC CCGCGACGCG ACCGCCGCAT  TCCAGAAGGA CGCCGCCTAC GACCCCGCCG CCGTGGGGGT CAGCCCGACC AGGGGCGTCC TGGACAACAG CTACTACCAC AACAACCTCA TCAACAAGGT GCTCTTCAAG TCCGACTGGG  TGCTGCGCAC CGACAGCTTC GCCGCCGGCA AGCTGCAGGA GTACAAGGAC AACGCGGCGG AGTGGAACTC CGACTTCGCC GCCGCCATGG TCAAGCTCAG CAGCCTGCCT GCGCAGGGCA  GGAACCTGGA GATCAGGAAG AACTGCCGGT TCACCAACCA GCAGTACTAC TAGAAGGACC GCCTCGGCGG CGCCGACGCC ACGCCCATCG ACTCCGACTA CCAGTCGGCG CTCACCAAGG  CCACGCCGCC GGAGCTGCTG GGCAAAGGGC AGAACCCGAC CTTACCCAAC AACCCCCGCG ACGCGACCGC CGCATTCCAG AAGGACGCCG CCTACGACCC CGCCGCCGTG GGGGTCAGCC  CGACCAGGGG CGTCCTGGAC AACAGCTACT ACCACAACAA CCTCATCAAC AAGGTGCTCT TCAAGTCCGA CTGGGTGCTG CGCACCGACA GCTTCGCCGC CGGCAAGCTG CAGGAGTACA  AGGACAACGC GGCGGAGTGG AACTCCGACT TCGCCGCCGC CATGGTCAAG CTCAGCAGCC TGCCTGCGCA GGGCAGGAAC CTGGAGATCA GGAAGAACTG CCGGTTCACC AACCAGCAGT 
ACTACTAG 

Retrieve as FASTA  
CDS
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ATGGCGAGGC TCAACGCCGC CGCGCTACCT CTGTGCGTGG CACTGCTCGC CCTCTGCCTC GCCGGGCAGT CGGCCGCCGG CCGCTACTAC TCGGACAAAG TCCAGGACAA GGTGAGGAAG  GAAGTGGAGA AGGCCATGGC GTACAACCCC AGCGTCGGCC CCGCCCTCGT CCGCTTGGTG TTCCATGACT GCTGGGTCAA TGGTTGTGAT GGATCCGTGC TCCTGGACAA GACGCCCACC  GACGGCACCA ACACCGAGAA GAAGGCCGTC AACAACATCG GCCTCGCCGG CTTCGAGGTC ATCGACACCA TCAAGCAGAA GGTCGGCGCC GACGCCTCCT GCGCCGACAT CCTCGCCTTC  GCGGGGCGCG ACGCGGCCGA CATCCTCAGC GGCGGCAAGA TCTTCTACAC CATCCCTGGC GGCCGCAAGG ACGGCGTCGT CTCCTCCGCC GCGGCCGCCG ACGCCAACCT CCCCGAGTCC  ACCTTCGACT TCGACCAGCT GCAGACCAAC TTCGCCGCGA CCGCCCGGAA CTTCACCGTC GAGGAGCTCG TCGTCCTCTC CGGCGCGCAC TCCATCGGCG TCGCGCACCT CTCGTCCTAC  AAGGACCGCC TCGGCGGCGC CGACGCCACG CCCATCGACT CCGACTACCA GTCGGCGCTC ACCAAGGCCA CGCCGCCGGA GCTGCTGGGC AAAGGGCAGA ACCCGACCTT ACCCAACAAC  CCCCGCGACG CGACCGCCGC ATTCCAGAAG GACGCCGCCT ACGACCCCGC CGCCGTGGGG GTCAGCCCGA CCAGGGGCGT CCTGGACAAC AGCTACTACC ACAACAACCT CATCAACAAG  GTGCTCTTCA AGTCCGACTG GGTGCTGCGC ACCGACAGCT TCGCCGCCGG CAAGCTGCAG GAGTACAAGG ACAACGCGGC GGAGTGGAAC TCCGACTTCG CCGCCGCCAT GGTCAAGCTC 
AGCAGCCTGC CTGCGCAGGG CAGGAACCTG GAGATCAGGA AGAACTGCCG GTTCACCAAC CAGCAGTACT ACTAG 

Retrieve as FASTA