Entry information : CroPrx03-1A_other(prx2)
Entry ID 6480
Creation 2009-03-24 (Cyril Jourda)
Last sequence changes 2011-04-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-04-15 (Christophe Dunand)
Peroxidase information: CroPrx03-1A_other(prx2)
Name CroPrx03-1A_other(prx2)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx03-1A_other
start..stop
S start..stop
CroPrx03-1A 735 0 1..365 1..365
CroPrx03-1B_Other 682 0 28..365 23..360
CroPrx03-1B 678 0 28..365 23..360
CroPrx01 571 0 29..365 22..363
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1531..1803 273 N° 2 2674..2868 195 N° 3 4456..5085 630  
join(1531..1803,2674..2868,4456..5085)


exon

Literature and cross-references CroPrx03-1A_other(prx2)
Literature REFERENCE 1. Amorim M.I., Figueiredo R., Carqueijeiro I., Duarte P., Henriques G., Rocha A., Hilliou F., Sottomayor M. A class III peroxidase gene with alternative splicing in the medicinal plant Catharanthus roseus (L.) G. Don. (2008).

REFERENCE 2 Murata,J., Bienzle,D., Brandle,J.E., Sensen,C.W. and De Luca,V. Expressed sequence tags from Madagascar periwinkle (Catharanthus roseus) FEBS Lett. 580 (18), 4501-4507 (2006).
Protein ref. GenPept:   CAP72492 UniProtKB:   B2G335
DNA ref. GenBank:   AM937226 (1531..5085)
EST ref. GenBank:   FD423422.1 [5' end]
Protein sequence: CroPrx03-1A_other(prx2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   365 (329)
PWM (Da):   %s   39912.02 (36011.1)  
PI (pH):   %s   6.62 (6.66) Peptide Signal:   %s   cut: 37 range:37-365
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVFMSSFSSSSSSTSLLLFLISSLLISTHFNVHIEAQTTPPIVSGLSFTFYDSSCPDLESIIRNRLRRVFRNDIGQAAGLLRLHFHDCFVQGCDGSVLLVGSASGPGEQDAPPNLSLRQEAFRIINDLRRRVHSRCGRIVSCSDILALAARDSVVLSGGPEYDVPLGRRDGLNFATQNETLNNLPPPSSNTSELLTSLATKNFNATDVVALSGGHTIGVGHCVSFEERLYPTQDPTMDQTFARNLRLTCPALNTTNTTVLDIRSPNRFDNRYYVDLMNRQGLFTSDQDLYTDRRTRGIVTDFAVNQTLFFEKFVYAMIKMGQLNVLTGNQGEIRANCSVRNAASGRSSSLVSVVEDAAEVGLSMF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2) and 2 ESTs (EG560186.1). Alternative splicing is confirmed with ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTTTATGAGTTCCTTTTCCTCTTCTTCATCTTCAACTTCTCTGCTGCTCTTTCTCATTTCCTCTCTTTTGATTTCTACCCACTTTAATGTCCATATCGAAGCTCAAACAACTCCA
CCTATAGTGAGTGGACTTTCATTCACCTTTTATGATTCTAGTTGCCCAGACCTGGAATCCATTATCAGAAACCGCCTCAGGCGGGTCTTCAGAAACGATATTGGACAAGCTGCTGGCTTG
CTTCGCCTTCATTTTCATGATTGCTTTGTCCAG
GTAACACCACTTTGATCAACTCCATTCACTCAGGCTGAACTTCGATAGCTTTTATTTTGTAAGGAAGGGTCTTGAATTTTTTGAGAG
GTGAATTGTTTGTGACTCTCATATCCACACTCATCAAACATGTGAGCTCTATTGAGGCATATCACCACTAATGTGGCTTATATCTCCCATTGCGAAGACAACAACTATAAGACAACTATA
AGAGTTATGTAACCTAATACAAATCACATGATCTATAAATAGGAATATAAGTCGGATTCATTATAGAATTCGTCTGTTTTCGCAAGTTTAGGTCCAAAGTAAAAAATTGAAAAGTTTTGA
TTTTAATAAGTTGATAAAGTTGAGCTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGAGTGAAGAAATTGTAGGCCCTGTTGGTAAGATGGTGTCCACTAAATAA
ATCTCATTTGTTTCCGTGCCATAGAAATGATAGGAGATAGAAATTATAATAAGTAAGTTCTATTTGTCAAATGTAATATTTGAATCCTAGTAAACAAATTGAAAAAATCTTACTCTATTC
ACTGCTAAAATAACTATGGACGACTAGTACAAAAGTTTGATAATTATAGTATTATATTCTTGAAGGAACTTTAGCTCTTGTCTGAAGATGTTTACGGGTTAAATACTATCTCAATTGTAC
AAAAATTTGTAAACTACGAGTCAGTCTCATCAGTAAATCACATCTCTTGCAATATTATGTAAATCTTACATGTTAGAAAAAAGGCTTGAAACTTATTGGTAAGATTAAAGATTCACTAGA
TTATCTAACTCACTCTTGTCTACTATGAGATGACTTATATTTGATGGTTATTGTTATACGTAGGGATGCGATGGATCAGTCCTGTTAGTGGGATCAGCAAGCGGACCTGGAGAGCAGGAT
GCGCCACCAAACTTGAGTCTCCGACAGGAGGCTTTCAGGATCATCAATGACCTCCGAAGGCGCGTGCATAGTAGATGTGGGAGAATTGTTTCTTGTTCCGATATACTTGCTCTCGCTGCA
CGCGACTCTGTTGTTCTG
GTAAGTTTTTACTATCTCCATTTTATGTTATACGTCGTCACTCGAGTGTATTCTTTCTATCTCAAAGTATATATTATTTTCATTAGAACAATTAATGTCTGT
CAAGAGAAAATTTAGTCTATTTCCTTTTTAATCTAGATAATTTAATAATTTACTTAATTCATGTGACATATCTTATATGTGATAGATAATATGAAACGAAGATAGTAATAGTATATATAG
GTGAAAATACTATTGTCATTCATCGGCAAAAAGCTCAACCAATTAGTATAAAAGGGGGAGAAATCCGCACACATCATAGTACTTTATATGAAAAATACTTGTTCGTAAAATTTAATCGTA
AATTTTATTTTCTCATTCTTTTTTCATACAGTAGATAAGAGGTGCAGTTCAAATTCAGAACTTATACAATGATGAATAATACTTTTTGAACTACTACATTGTCACTTTTAGTCCTAATTC
GTGCATAATTGGACAGTGAAGCCGTCGATAGAAGAGTAAAGTATTTTTGCTTTCTATACTAAGGATGAATTTTCCAAAAAAAAAAAAAAAGAAAAAGGATGAATTATGGCCTTAAATTGT
GTGTAGGTTATTTGTTCAATCATTGTCCAACAATCGCATAAGAGTTTGGGTACACTTGGATTAGATTTTATTTTAAAAGTAGGATAGATTTTTTTTCTTAGCTTTCCTGAAAGATAAAAT
TTTTTGTAAGATAAGAGATGAAGTCCAAAGTTAGAAATTAAAGATTTATTTAAATTATTTTTTAATTCTTAACATTTTTTATTTTAATCATGATAAAAAAATCATTTTTCTTTTTGGAAA
AACAGAATCCAAACACACTCTAATTAAAGAATTCGCATATAGAAACAAAAGCTAAAAATTCATGAGTTTATCTAGGAAAACTCTAAAATATTTTTTTAAAATAAAAAATACAAACATGTA
AAGTTTGGGAAATATATGAGGCAGAATAGACAGACATCAAACAACTTTGGTAGATGGACGAAGATATATAAGTCTTATTTTTCCTTAATAAATGTACGAGTTGGTGTTGGTTGAAATTGA
ACTGTTAAAGTGTCTTTTTCGTGTGTGTAATCCAATCTTAGATCAGTTTATGGATTATAATACTGGCCACCTATATGTAGTTAGTGAAGAGGAAGCAGACCAATAAATACATGGAGGTGT
TACATAATTCGAAGGTCAAGCGCCATGTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGGTAAATCATGGTCTATTTG
GAGTGTTATTCATTTCATAAAATTTTTTATCCTTTTTTCTTTATTTTCTCTTGCAAAAGTCAAATATAAACTTAAGGAATAATTCACTCTTCTCAACTTTGTTACCATACAAGGTGGAGT
AATTTTTTATGCCAGGTATATAAAGAAATTTTTAAAAATATTGAGAGCCAAAAATTAAAAAAAGAAGTTATAATTATAAGCGAATTATATATATATATATATATGATGTAGTTATTATAA
TTGTGAAATGTGATATTAATAAGTAGAATTGTGCAAATAATGCAGTCAGGAGGTCCCGAATACGATGTTCCTTTGGGAAGAAGAGATGGACTTAACTTTGCAACACAAAATGAGACACTA
AATAACCTTCCACCTCCATCAAGCAACACAAGTGAGCTCCTTACTTCACTTGCCACCAAAAATTTCAATGCCACAGATGTTGTAGCTCTTTCAGGTGGCCACACAATTGGTGTAGGCCAT
TGCGTTTCCTTTGAAGAAAGACTCTATCCAACTCAAGATCCAACAATGGACCAAACATTTGCAAGAAACCTAAGACTCACTTGTCCAGCATTAAATACAACAAACACAACTGTTTTGGAC
ATTCGATCACCAAACAGATTTGATAATAGGTACTATGTTGATCTAATGAACCGACAAGGACTTTTCACTTCGGACCAAGATTTGTACACTGATCGAAGAACAAGAGGTATTGTTACTGAT
TTTGCTGTTAATCAAACCTTATTCTTTGAGAAGTTTGTTTACGCAATGATAAAGATGGGACAATTGAATGTCTTGACGGGGAATCAAGGTGAAATCAGAGCCAATTGTTCAGTTCGGAAT
GCCGCCAGCGGACGTTCTTCCAGCTTGGTATCGGTTGTGGAAGATGCTGCAGAAGTTGGCTTGTCCATGTTTTAA

Retrieve as FASTA