Entry information : Hs1CysPrx[P]03
Entry ID 6560
Creation 2009-01-31 (Christophe Dunand)
Last sequence changes 2010-12-08 (Marie Brette)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2011-08-12 (Christophe Dunand)
Peroxidase information: Hs1CysPrx[P]03
Name Hs1CysPrx[P]03
Class 1-Cysteine peroxiredoxin    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Metazoa Chordata Mammalia Hominidae Homo
Organism Homo sapiens (human)    [TaxId: 9606 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Hs1CysPrx[P]03
start..stop
S start..stop
Ptro1CysPrx[P]03 342 3e-122 22..192 13..183
Pabe1CysPrx[P]03 325 1e-115 4..192 2..190
Mmul1CysPrx[P]03 253 2e-87 22..192 1..177
Cja1CysPrx01 213 1e-70 22..185 23..189
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 95494281..95494856 576  
join(95494281..95494856)


exon

Literature and cross-references Hs1CysPrx[P]03
DNA ref. GenBank:   NC_000012.1 (95494281..95494854)
Protein sequence: Hs1CysPrx[P]03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   191
PWM (Da):   %s   20553.32  
PI (pH):   %s   4.88
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSLLLPSTRL PTRRLIALLA xICSHDFLGD SCGILFSHPW DSKPVCTMEL GRAAKLAPEF TKSNVKLTAL ATDSAEDHLA WSKDINAYNS DERTEKCPFP NIDGKDQDLA VLLGMLDPPE 
LEEKGMGVRA YGVYFCS*QE TEAVYPATTG RNLDEIHGVV ISLQLTAEER LxTLIDKKNG NSYVAGHGGS RL 

Retrieve as FASTA  
Remarks Pseudogene (chromo 12). Stop codon in frame and frame shift. No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCACTAC TGCTGCCATC CACAAGGCTC CCAACTCGGA GGCTAATCGC ACTGTTGGCT GTnATCTGTT CCCACGACTT TCTAGGAGAC TCCTGTGGCA TTCTTTTTTC CCACCCTTGG  GACTCTAAAC CAGTGTGCAC TATGGAGCTT GGCAGAGCTG CAAAGCTGGC ACCAGAATTC ACCAAGAGCA ATGTGAAGTT GACTGCCCTT GCAACAGACA GTGCTGAGGA CCATCTTGCC  TGGAGCAAGG ATATCAATGC TTACAATAGT GATGAGCGAA CAGAAAAATG CCCTTTTCCC AACATTGATG GTAAGGATCA GGACCTTGCC GTCTTGTTGG GCATGCTGGA TCCTCCTGAG  TTGGAAGAAA AGGGAATGGG TGTCAGAGCT TATGGTGTTT ATTTTTGCTC CTGACAAGAA ACTGAAGCTG TCTACCCAGC TACCACTGGC AGGAACTTGG ATGAGATTCA CGGGGTAGTT 
ATCTCTCTCC AGCTGACAGC GGAAGAGAGG TTGCCnACCT TGATTGATAA GAAGAATGGA AATAGTTATG TTGCTGGGCA TGGTGGCTCA CGGCTG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCACTAC TGCTGCCATC CACAAGGCTC CCAACTCGGA GGCTAATCGC ACTGTTGGCT GTnATCTGTT CCCACGACTT TCTAGGAGAC TCCTGTGGCA TTCTTTTTTC CCACCCTTGG  GACTCTAAAC CAGTGTGCAC TATGGAGCTT GGCAGAGCTG CAAAGCTGGC ACCAGAATTC ACCAAGAGCA ATGTGAAGTT GACTGCCCTT GCAACAGACA GTGCTGAGGA CCATCTTGCC  TGGAGCAAGG ATATCAATGC TTACAATAGT GATGAGCGAA CAGAAAAATG CCCTTTTCCC AACATTGATG GTAAGGATCA GGACCTTGCC GTCTTGTTGG GCATGCTGGA TCCTCCTGAG  TTGGAAGAAA AGGGAATGGG TGTCAGAGCT TATGGTGTTT ATTTTTGCTC CTGACAAGAA ACTGAAGCTG TCTACCCAGC TACCACTGGC AGGAACTTGG ATGAGATTCA CGGGGTAGTT 
ATCTCTCTCC AGCTGACAGC GGAAGAGAGG TTGCCnACCT TGATTGATAA GAAGAATGGA AATAGTTATG TTGCTGGGCA TGGTGGCTCA CGGCTG 

Retrieve as FASTA