Entry information : BrPrx54-1Aa_other (Bra009221 )
Entry ID 6602
Creation 2009-02-20 (Christophe Dunand)
Last sequence changes 2009-02-20 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-23 (Christophe Dunand)
Peroxidase information: BrPrx54-1Aa_other (Bra009221 )
Name (synonym) BrPrx54-1Aa_other (Bra009221 )
Class Class III peroxidase    [Orthogroup: Prx005]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx54-1Aa_other
start..stop
S start..stop
BnPrx54-1_other 694 0 1..358 1..358
BnPrx54-3_other 627 0 1..324 1..324
TsPrx54 612 0 1..358 1..361
AruPrx54 602 0 1..358 1..358
Literature and cross-references BrPrx54-1Aa_other (Bra009221 )
Literature Lee,S.C., Lim,M.H., Kim,J.A., Lee,S.I., Kim,J.S., Jin,M., Kwon,S.J., Mun,J.H., Kim,Y.K., Kim,H.U., Hur,Y. and Park,B.S. Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray. Mol. Cells 26 (6), 595-605 (2008).
EST ref. GenBank:   EX035332.1 [5' end]   EX027477.1 [3' end]
Cluster/Prediction ref. UniGene:   Bra.9618
Protein sequence: BrPrx54-1Aa_other (Bra009221 )
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   358 (327)
PWM (Da):   %s   37338.48 (34143.9) Transmb domain:   %s   i7-29o
PI (pH):   %s   4.39 (4.32) Peptide Signal:   %s   cut: 32 range:32-358
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAVANWSATC HGLFIISFLV IVSALFGTSS AQLNATFYSG TCPNVSAIVR STIEQALQSD PRIGASLIRL HFHDCFVNGC DGSLLLDDSA NIQSEKNAVP NANSTRGFNV VDDIKTALEN  ACPGIVSCSD ILALASEASV SLAGGPTWAV LLGRRDGLTA NLSGANTGLP SPFEGITNIT AKFTAVGLNT TDVVVLSGAH TFGRAACATF NNRLFNFNGT GSPDPTLNST LLSSLQQLCP 
QNGSASVVTN LDLSTPDAFD NNYFTNLQSN NGLLQSDQEL LSDTGSPTIP IVTSFASNQT QFFEAFALSM IKMGNISPLT GSSGEIRQDC KVVNGQSTTQ AIELRSGSAE KTVNLEEM 

Retrieve as FASTA  
Remarks Complete sequence from 33 ESTs. Cultivar="Chiifu".