Entry information : UmPrxV
Entry ID 6617
Creation 2009-03-05 (Christophe Dunand)
Last sequence changes 2009-03-05 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-04-03 (Catherine Mathe (Scipio))
Peroxidase information: UmPrxV
Name UmPrxV
Class Atypical 2-Cysteine peroxiredoxin (type V)    [Orthogroup: PrxV001]
Taxonomy Eukaryota Fungi Basidiomycota Ustilaginomycetes Ustilaginaceae Ustilago
Organism Ustilago maydis    [TaxId: 5270 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value UmPrxV
start..stop
S start..stop
SrePrxV 314 6e-112 2..172 3..173
SjapPrxV01 160 3e-51 18..172 5..155
TmelPrxV02 159 8e-51 33..172 20..156
SlutPrxV01 149 1e-46 27..169 36..175
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 132735..133253 519  
join(132735..133253)


exon

Literature and cross-references UmPrxV
DNA ref. JGI genome:   contig_1_108 (132735..133253)
Protein sequence: UmPrxV
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   172
PWM (Da):   %s   18143.33  
PI (pH):   %s   5.26
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSFTDKIKAA IKGDVKEGAK LETGIKLKEN NPENADVSLD NLVGKSIIVG VPGAFTPPCS SQVPGYIQHA SEFQSKGVEA IYIVAVNDQF TVKAWKEKLG ADTAPTVHFL ADDTGAFTQA 
VGQDFDASGL LGNHRSKRYA FVVEGGVVRK AFVEDNAPDV TVTSAENVLK AI 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, no intron) and 20 ESTs.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCTTCA CCGACAAGAT CAAGGCTGCC ATCAAGGGCG ACGTCAAGGA GGGCGCCAAG CTCGAGACCG GCATCAAGCT CAAGGAGAAC AACCCCGAAA ATGCCGACGT CTCGCTTGAC  AACCTGGTCG GCAAGTCGAT CATCGTTGGT GTTCCTGGTG CCTTTACTCC TCCCTGCTCG TCGCAGGTGC CTGGCTACAT CCAGCACGCC TCGGAATTCC AGTCCAAAGG CGTCGAGGCT  ATCTACATTG TCGCTGTCAA CGACCAGTTT ACCGTGAAAG CCTGGAAGGA AAAGCTCGGC GCTGACACCG CTCCCACCGT CCACTTCTTG GCCGACGACA CTGGCGCTTT CACCCAGGCT  GTTGGTCAGG ACTTTGACGC CAGTGGTCTA CTCGGCAATC ACCGATCCAA GCGATACGCC TTTGTCGTCG AGGGTGGTGT CGTTCGCAAG GCTTTTGTCG AGGACAACGC TCCTGACGTC 
ACTGTCACTT CGGCTGAGAA CGTGCTCAAG GCTATCTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCTTCA CCGACAAGAT CAAGGCTGCC ATCAAGGGCG ACGTCAAGGA GGGCGCCAAG CTCGAGACCG GCATCAAGCT CAAGGAGAAC AACCCCGAAA ATGCCGACGT CTCGCTTGAC  AACCTGGTCG GCAAGTCGAT CATCGTTGGT GTTCCTGGTG CCTTTACTCC TCCCTGCTCG TCGCAGGTGC CTGGCTACAT CCAGCACGCC TCGGAATTCC AGTCCAAAGG CGTCGAGGCT  ATCTACATTG TCGCTGTCAA CGACCAGTTT ACCGTGAAAG CCTGGAAGGA AAAGCTCGGC GCTGACACCG CTCCCACCGT CCACTTCTTG GCCGACGACA CTGGCGCTTT CACCCAGGCT  GTTGGTCAGG ACTTTGACGC CAGTGGTCTA CTCGGCAATC ACCGATCCAA GCGATACGCC TTTGTCGTCG AGGGTGGTGT CGTTCGCAAG GCTTTTGTCG AGGACAACGC TCCTGACGTC 
ACTGTCACTT CGGCTGAGAA CGTGCTCAAG GCTATCTAG 

Retrieve as FASTA