Entry information : CcinLDS01
Entry ID 6646
Creation 2009-03-29 (Christophe Dunand)
Last sequence changes 2009-03-29 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-08-13 (Marie Brette (Scipio))
Peroxidase information: CcinLDS01
Name CcinLDS01
Class Linoleate diol synthase (PGHS like)    [Orthogroup: LDS001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Psathyrellaceae Coprinopsis
Organism Coprinopsis cinerea (Coprinus cinereus)    [TaxId: 5346 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CcinLDS01
start..stop
S start..stop
LbiLDS01 1198 0 4..1089 6..1073
JargLDS01 1035 0 2..1086 3..1067
AbLDS01_burnettii 1006 0 1..1088 4..1084
AbLDS01_bisporus 995 0 1..1088 4..1084
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1201226..1201390 165 N° 2 1201451..1201513 63 N° 3 1201564..1201645 82 N° 4 1201702..1202231 530
N° 5 1202296..1202446 151 N° 6 1202511..1202575 65 N° 7 1202639..1203089 451 N° 8 1203151..1203194 44
N° 9 1203253..1204257 1005 N° 10 1204317..1205030 714  
join(1201226..1201390,1201451..1201513,1201564..1201645,1201702..1202231,1202296 ..1202446,1202511..1202575,1202639..1203089,1203151..1203194,1203253..1204257,12 04317..1205030)


exon

Literature and cross-references CcinLDS01
DNA ref. JGI genome:   Chr_12 (1201226..1205027)
EST ref. GenBank:   DY847938.1 [3' end]
Protein sequence: CcinLDS01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   1089
PWM (Da):   %s   121723.19  
PI (pH):   %s   7.38
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSILRKLAQTVDYINESHAPVDTDGGRTQSGVYEKKVAALYQAFTNPPVTVDDLPAYVDAFLNSGGVGIDDRELLLEKLLTLMASTKDTSFSHKVQEAVISLLYKDLPHPPSGYLRVPPTTAPAPPLDVKYAYRTSDGSHYNPLAPAMGMAGTPYARSVPSRHTLPKESLPDPDLIFDTLLKREKFVPHPGGMSALFFAFADLVIHSIFKTNPHDWSINDASSYLDLSVLYGHSDRDVNAIRRKDGTGRLWNDVFADYRITHMPPASCALLVLLSRNHYVAEKILDINESGKYTRTFANNAARDAQDDEIFHRARLVNCGYFMHIILGDYVGAILGLVRDGSDWRLDPMTMRSRNHDFVPVGEGNVVSTEFNLLYRWHATLSDEDTKWTESLFQKMFSGKDPKDIKIDDFKEAAHKHLVLNIENVREWTFDGLKRGADGRFSDDDLARIIQNSTEYRAGAFKARGIPEALRFIEVMGIRQARTWGVCSLNEFRRFMGLKPYADFKQWNPDPKINAAQALYRDIENLELHVGLQAEETKEPGEGAGLCPGYTISRAILADAVCLTRGDRFFTVDYTPQNLTSWGFQDCAYDKQDGSFGGLLTKLLLRTLPNHYSRGNAYAHFPFMVPTFLEEHWKVHKPELVGKYTWTRPRQQPTIVPVGDYEIVTKVFADNSAFLSAYETRTLNAVKATLEKSVRRTLTLRGKRVSQAPGGSTTDKRLTQGRDEINTQILALPLSTYFSSKTKELIKAKGFTSADGSTAYVDIVRDVINLLPVHFVSQRIAGLPLKSDSTPKGVWYEQDMYDWFTDIAEYVYLNFQPEHDWRLRESTQLHGEEIIGYIKSHIDSIKNKFSLPDVRNHIAIGHNGHDFLTRIVDSLRNTDTSNRETAARIFAAVVPTAAIYASALSQIVSFFLQPSNASAAEALVSLPKSKDTATATTEVLGYIREALRLNPAIPGFYRTAARDVVLGPKTIQAYEVVYGSLYSANRDPQVFGPNPEVPVFNRQGKGAVLGLPNTGLTTEEFLAATVPAVLSEIMSLKGVKKAANKSGRFNEFQENWHGYPRKQYINAKGAVSSFPDSLILQYQVA*

Retrieve as FASTA  
Remarks Complete sequence from genomic (9 introns) and 2 ESTs (DY849051). Strain="okayama7#130".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTTCCATCCTTCGCAAGCTCGCCCAGACCGTGGACTACATCAACGAGTCCCATGCACCCGTCGACACCGACGGCGGGCGCACACAGAGCGGCGTCTACGAAAAGAAGGTCGCTGCC
CTCTACCAGGCCTTCACTAATCCACCCGTCACTGTGGATGATTTG
GTGTGTACACATTCCTGCACGACGCCCACGAACCCCACTAACAGTGTCGTCCGACCGCAGCCCGCCTATGTCGAT
GCTTTCCTCAACTCGGGTGGTGTGGGCATTGACGATCGAGAGCTTCTG
GTAATCAAAACCCTATTCTACAGTCGCCACAGGGACTAACGTGATCCTAGCTCGAGAAGCTGTTGACGCTTA
TGGCCAGTACGAAGGATACATCGTTCTCCCATAAGGTGCAAGAGGCCGTCATCAGCCTAC
GTACGTCCGCCCTCCGCGCCCTCCGCCGCCAATATCTATACTCATACCCCATCAAGTGTA
CAAGGATCTACCTCACCCTCCTAGCGGCTACCTTCGTGTACCACCCACTACCGCCCCTGCTCCTCCCCTCGACGTGAAGTATGCCTACCGGACATCTGACGGGTCGCATTACAACCCTTT
GGCCCCGGCAATGGGCATGGCAGGGACTCCCTACGCACGTTCGGTGCCCTCTCGGCACACCCTGCCCAAGGAATCACTCCCGGACCCTGACCTCATTTTTGACACGCTCCTCAAGCGCGA
GAAGTTCGTCCCCCATCCGGGAGGCATGTCCGCACTCTTCTTCGCCTTTGCCGACCTCGTCATTCACAGCATCTTCAAAACCAACCCTCATGACTGGTCAATCAATGATGCTAGTAGTTA
CCTCGACCTCAGCGTGCTCTATGGGCACAGCGACCGGGACGTCAATGCTATCAGGCGAAAGGACGGCACGGGTCGTCTGTGGAATGATGTATTCGCGGATTACAGGATCACCCATATGCC
TCCTGCGAGCTGCGCCTTGTTGGTGCTGTTAAGCAGGAATCATAAC
GTCAGTTCATTCAACCAGGATCCCCGTTTCTTCAAATGAAGCTCACTTCTTCCTCTCCATATAGTACGTCGCCG
AGAAGATCCTGGATATCAACGAAAGTGGGAAGTACACCCGAACATTTGCCAACAATGCCGCTCGCGACGCACAGGACGACGAGATCTTCCACCGAGCCCGTCTTGTCAACTGTGGATACT
TCATGCACATCATTCTCGGAG
GTACATTGCCATCCACCCTAGTCCTACGTGCGTATACTAAGATGTTATCCCCGTCAATTTTTAGACTACGTTGGCGCTATTCTGGGACTTGTGCGGGAT
GGCAGTGACTGGCGCTTAGATCCCATGATG
GTCAGTGATGCAGTACGCCACGACTCCTGCGTAACCATCTAACCGCCTCTTCATCTGTTTCAGACTATGCGCAGCCGGAACCACGATTTC
GTACCCGTCGGAGAGGGCAACGTCGTCTCGACCGAGTTCAACCTTCTCTATCGCTGGCATGCAACCTTGTCAGACGAGGACACCAAATGGACGGAATCCCTCTTCCAGAAGATGTTCAGC
GGCAAGGACCCCAAGGACATCAAGATTGACGACTTCAAAGAGGCGGCCCACAAGCACTTGGTGCTCAACATTGAGAACGTCCGCGAATGGACGTTCGATGGGCTTAAGCGTGGTGCAGAT
GGTCGATTCAGCGATGATGACCTCGCTCGCATCATCCAGAACTCGACTGAATACCGCGCTGGTGCTTTCAAGGCCCGTGGTATTCCAGAAGCCTTGCGCTTCATCGAAGTCATGGGCATC
AGGCAGGCTCGCACTTGGGGAGTGTGCTCCCTAAATGAGTTCAGAAGGTTCATGGGTCTTAAAC
GTAAGTCTCTGCTCCCAGTTCCTTCTGGCTCTTCTACTCACATTTGGTAACTCATA
TCCAGCGTACGCCGACTTCAAGCAGTGGAATCCCGACCCCAAGATCTACGTACGTCGTTTCTTTCTGTTGAAGCCCCTTCTCGCTAACCCTTTTTGTATGGAAATAGAATGCTGCCCAAG
CGCTCTATCGTGATATCGAGAACCTCGAATTGCACGTCGGCCTCCAGGCTGAAGAGACCAAAGAACCCGGAGAAGGTGCAGGTCTCTGCCCTGGCTACACCATCTCCCGTGCCATTCTCG
CCGATGCCGTCTGCCTCACCCGTGGAGATCGCTTCTTCACCGTCGATTACACGCCCCAGAACCTCACTTCATGGGGCTTCCAGGACTGCGCTTACGACAAGCAAGATGGTTCCTTCGGCG
GCCTCCTCACCAAACTCCTCCTCCGCACTCTCCCGAATCACTACTCGCGAGGAAATGCCTACGCTCACTTCCCCTTCATGGTTCCTACTTTCTTGGAGGAACATTGGAAGGTGCATAAAC
CCGAGTTGGTTGGAAAATATACTTGGACCAGGCCTAGGCAGCAGCCCACGATTGTGCCTGTTGGAGACTACGAGATCGTCACCAAAGTTTTCGCTGACAACTCGGCCTTCCTCTCCGCGT
ACGAAACGCGTACCCTCAATGCCGTCAAAGCTACCCTCGAGAAATCTGTGCGCCGTACCCTAACACTCAGGGGAAAGCGTGTCTCCCAAGCCCCTGGAGGCTCGACTACCGATAAACGGC
TCACACAAGGCCGAGACGAGATCAACACCCAGATCCTCGCCCTCCCTCTCTCCACCTACTTCTCGTCCAAAACGAAGGAGCTCATCAAAGCCAAAGGATTCACCAGCGCGGATGGGTCCA
CTGCCTACGTAGACATTGTGCGTGATGTCATCAACCTCCTCCCAGTGCATTTCGTCTCGCAGCGGATTGCTGGCTTGCCGTTGAAGTCGGATTCGACGCCGAAGGGAGTGTGGTATGAGC
AAGATATGTATGATTGGTTCACGGATATCGCGGAGTATGTGTACTTGAACTTCCAACCGGAGCATGACTGGCGATTGAGGGAGTCGACGCAACTGCACGGGGAGGAGATTATTGGATACA
TCAAGTCCCACATTGACAGTATCAAGAACAAG
GTATGTCACTCCTTTGGCCCCCTTCCCTGGTCTTTCGCTCAATTCTGGCCTTTCTCTAGTTCTCTCTTCCCGATGTGCGCAACCACAT
TGCAATTGGTCACAATGGCCACGACTTCTTGACCAGGATCGTCGACAGCCTGCGCAACACCGACACATCCAACCGTGAAACGGCAGCACGCATCTTCGCAGCCGTCGTCCCCACCGCCGC
CATCTACGCCTCCGCACTCTCGCAGATCGTCTCATTCTTCCTCCAGCCTTCCAACGCCTCAGCTGCCGAAGCTCTCGTCTCCCTCCCCAAGTCCAAAGACACTGCTACCGCCACGACAGA
AGTGTTGGGTTACATCCGGGAAGCTCTCCGTCTGAACCCTGCCATTCCAGGGTTCTACAGGACCGCCGCACGCGATGTCGTGCTCGGGCCCAAGACGATCCAAGCCTACGAGGTCGTCTA
TGGAAGTCTGTACTCCGCCAACCGCGATCCCCAGGTCTTCGGACCTAACCCTGAGGTCCCCGTTTTCAATCGCCAAGGGAAAGGAGCGGTCTTGGGTCTCCCCAACACGGGTCTGACGAC
GGAGGAGTTCTTGGCTGCTACTGTCCCAGCCGTGCTTTCTGAGATCATGTCGCTGAAGGGGGTGAAGAAGGCCGCTAACAAGAGTGGAAGGTTCAATGAATTCCAGGAGAACTGGCATGG
GTACCCCAGGAAGCAGTATATCAACGCGAAGGGAGCTGTTTCGTCATTCCCGGATTCGCTGATTCTGCAGTACCAGGTTGCGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTTCCATCCTTCGCAAGCTCGCCCAGACCGTGGACTACATCAACGAGTCCCATGCACCCGTCGACACCGACGGCGGGCGCACACAGAGCGGCGTCTACGAAAAGAAGGTCGCTGCC
CTCTACCAGGCCTTCACTAATCCACCCGTCACTGTGGATGATTTG
CCCGCCTATGTCGATGCTTTCCTCAACTCGGGTGGTGTGGGCATTGACGATCGAGAGCTTCTGCTCGAGAAGCTG
TTGACGCTTATGGCCAGTACGAAGGATACATCGTTCTCCCATAAGGTGCAAGAGGCCGTCATCAGCCTAC
TGTACAAGGATCTACCTCACCCTCCTAGCGGCTACCTTCGTGTACCACCC
ACTACCGCCCCTGCTCCTCCCCTCGACGTGAAGTATGCCTACCGGACATCTGACGGGTCGCATTACAACCCTTTGGCCCCGGCAATGGGCATGGCAGGGACTCCCTACGCACGTTCGGTG
CCCTCTCGGCACACCCTGCCCAAGGAATCACTCCCGGACCCTGACCTCATTTTTGACACGCTCCTCAAGCGCGAGAAGTTCGTCCCCCATCCGGGAGGCATGTCCGCACTCTTCTTCGCC
TTTGCCGACCTCGTCATTCACAGCATCTTCAAAACCAACCCTCATGACTGGTCAATCAATGATGCTAGTAGTTACCTCGACCTCAGCGTGCTCTATGGGCACAGCGACCGGGACGTCAAT
GCTATCAGGCGAAAGGACGGCACGGGTCGTCTGTGGAATGATGTATTCGCGGATTACAGGATCACCCATATGCCTCCTGCGAGCTGCGCCTTGTTGGTGCTGTTAAGCAGGAATCATAAC
TACGTCGCCGAGAAGATCCTGGATATCAACGAAAGTGGGAAGTACACCCGAACATTTGCCAACAATGCCGCTCGCGACGCACAGGACGACGAGATCTTCCACCGAGCCCGTCTTGTCAAC
TGTGGATACTTCATGCACATCATTCTCGGAG
ACTACGTTGGCGCTATTCTGGGACTTGTGCGGGATGGCAGTGACTGGCGCTTAGATCCCATGATGACTATGCGCAGCCGGAACCACGAT
TTCGTACCCGTCGGAGAGGGCAACGTCGTCTCGACCGAGTTCAACCTTCTCTATCGCTGGCATGCAACCTTGTCAGACGAGGACACCAAATGGACGGAATCCCTCTTCCAGAAGATGTTC
AGCGGCAAGGACCCCAAGGACATCAAGATTGACGACTTCAAAGAGGCGGCCCACAAGCACTTGGTGCTCAACATTGAGAACGTCCGCGAATGGACGTTCGATGGGCTTAAGCGTGGTGCA
GATGGTCGATTCAGCGATGATGACCTCGCTCGCATCATCCAGAACTCGACTGAATACCGCGCTGGTGCTTTCAAGGCCCGTGGTATTCCAGAAGCCTTGCGCTTCATCGAAGTCATGGGC
ATCAGGCAGGCTCGCACTTGGGGAGTGTGCTCCCTAAATGAGTTCAGAAGGTTCATGGGTCTTAAAC
CGTACGCCGACTTCAAGCAGTGGAATCCCGACCCCAAGATCTACAATGCTGCC
CAAGCGCTCTATCGTGATATCGAGAACCTCGAATTGCACGTCGGCCTCCAGGCTGAAGAGACCAAAGAACCCGGAGAAGGTGCAGGTCTCTGCCCTGGCTACACCATCTCCCGTGCCATT
CTCGCCGATGCCGTCTGCCTCACCCGTGGAGATCGCTTCTTCACCGTCGATTACACGCCCCAGAACCTCACTTCATGGGGCTTCCAGGACTGCGCTTACGACAAGCAAGATGGTTCCTTC
GGCGGCCTCCTCACCAAACTCCTCCTCCGCACTCTCCCGAATCACTACTCGCGAGGAAATGCCTACGCTCACTTCCCCTTCATGGTTCCTACTTTCTTGGAGGAACATTGGAAGGTGCAT
AAACCCGAGTTGGTTGGAAAATATACTTGGACCAGGCCTAGGCAGCAGCCCACGATTGTGCCTGTTGGAGACTACGAGATCGTCACCAAAGTTTTCGCTGACAACTCGGCCTTCCTCTCC
GCGTACGAAACGCGTACCCTCAATGCCGTCAAAGCTACCCTCGAGAAATCTGTGCGCCGTACCCTAACACTCAGGGGAAAGCGTGTCTCCCAAGCCCCTGGAGGCTCGACTACCGATAAA
CGGCTCACACAAGGCCGAGACGAGATCAACACCCAGATCCTCGCCCTCCCTCTCTCCACCTACTTCTCGTCCAAAACGAAGGAGCTCATCAAAGCCAAAGGATTCACCAGCGCGGATGGG
TCCACTGCCTACGTAGACATTGTGCGTGATGTCATCAACCTCCTCCCAGTGCATTTCGTCTCGCAGCGGATTGCTGGCTTGCCGTTGAAGTCGGATTCGACGCCGAAGGGAGTGTGGTAT
GAGCAAGATATGTATGATTGGTTCACGGATATCGCGGAGTATGTGTACTTGAACTTCCAACCGGAGCATGACTGGCGATTGAGGGAGTCGACGCAACTGCACGGGGAGGAGATTATTGGA
TACATCAAGTCCCACATTGACAGTATCAAGAACAAG
TTCTCTCTTCCCGATGTGCGCAACCACATTGCAATTGGTCACAATGGCCACGACTTCTTGACCAGGATCGTCGACAGCCTGCGC
AACACCGACACATCCAACCGTGAAACGGCAGCACGCATCTTCGCAGCCGTCGTCCCCACCGCCGCCATCTACGCCTCCGCACTCTCGCAGATCGTCTCATTCTTCCTCCAGCCTTCCAAC
GCCTCAGCTGCCGAAGCTCTCGTCTCCCTCCCCAAGTCCAAAGACACTGCTACCGCCACGACAGAAGTGTTGGGTTACATCCGGGAAGCTCTCCGTCTGAACCCTGCCATTCCAGGGTTC
TACAGGACCGCCGCACGCGATGTCGTGCTCGGGCCCAAGACGATCCAAGCCTACGAGGTCGTCTATGGAAGTCTGTACTCCGCCAACCGCGATCCCCAGGTCTTCGGACCTAACCCTGAG
GTCCCCGTTTTCAATCGCCAAGGGAAAGGAGCGGTCTTGGGTCTCCCCAACACGGGTCTGACGACGGAGGAGTTCTTGGCTGCTACTGTCCCAGCCGTGCTTTCTGAGATCATGTCGCTG
AAGGGGGTGAAGAAGGCCGCTAACAAGAGTGGAAGGTTCAATGAATTCCAGGAGAACTGGCATGGGTACCCCAGGAAGCAGTATATCAACGCGAAGGGAGCTGTTTCGTCATTCCCGGAT
TCGCTGATTCTGCAGTACCAGGTTGCGTGA

Retrieve as FASTA