Entry information : BrPrx17-1Ab_other (Bra030241)
Entry ID 6902
Creation 2009-08-05 (Christophe Dunand)
Last sequence changes 2014-02-03 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-04-10 (Christophe Dunand)
Peroxidase information: BrPrx17-1Ab_other (Bra030241)
Name (synonym) BrPrx17-1Ab_other (Bra030241)
Class Class III peroxidase    [Orthogroup: Prx018]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx17-1Ab_other
start..stop
S start..stop
AtPrx17 605 0 6..329 5..329
AlyPrx17 605 0 6..329 5..329
BstrPrx57 604 0 14..329 13..328
BrPrx17-1Aa_other 602 0 16..327 16..327
Literature and cross-references BrPrx17-1Ab_other (Bra030241)
EST ref. GenBank:   EE526356.1 [5' end]   EX047382.1 [3' end]
Cluster/Prediction ref. UniGene:   Bra.13301
Protein sequence: BrPrx17-1Ab_other (Bra030241)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (309)
PWM (Da):   %s   36671.48 (34386.2)  
PI (pH):   %s   6.51 (6.16) Peptide Signal:   %s   cut: 21 range:21-329
Sequence
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Send to Peroxiscan
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MSVFNPHLIL HLLLLTVVTG EILRPRFYSE TCPEAESIVR REMKKAMFKE ARSVASVMRL QFHDCFVNGC DASVLLDDTP NMLGEKLSLS NINSLRSFEV VDYIKEALEK ACPATVSCAD  IVIMASRDAV ALTGGPDWEV KLGRKDSLTA SQKDSDDIMP SPRANATFLI DLFKRFDLSV KDMVALSGSH SIGQGRCFSI MFRLYNQSGS GKPDPVLEPV YKKRLNKLCP LGGDENVTGD 
LDATPHVFDN QYFKDLVSGR GFLNSDQTLY TSRETREYVK RFSEDQGEFF GAFAEGMVKL GDLQSGRPGE IRSNCRVVNR RHNDVLLVS* 

Retrieve as FASTA  
Remarks Complete sequence from 3 ESTs and genomic (intron 1 and 2, EX131753.1).
Promoter
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Send to cis Analysis
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nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnCAATGAAA GTTTGGTGTT TTTTTGGTCA GCCCAAAAGT TCATGTTTCT TTTGGCAATT CGTGCAAAGT TGAGGTTTTT TTTGGTCGAA TTCTCGTAGT  ATTATTTTTG AACTATACTA TTTTCTTATT TTGATTTGTG TTTCTCTTGT TTTTATTGTT GTTGTTGCAA ATGTGGTCTT TTGTTTAGTC TACAAGACCA AGACTTGTAG TTTGATAGTT  GTGGAAGTGT TTTTTTTTTT TGAACACCGT TGTGGAAGTG TTATTATCGT GAAATACGAG GGTTTATAAA ATATCATGAC TGTAATGGAT GTTGCCTTCA GCATGTTAGA TGTGCTTCAA  GTCTTCAACG CATATATGTA CTTTATAATT GAGTAATTTT ACCAACCCAA CGTATAGTAC GTAACTGTTA GGAGGATAAG GTTTATATTC CCTTCTACAA AGTCAAAAGT GGCGTTTAAA  GCTGAAACCA CTTTACTTCT TCATGACCTT CGGAAGCTTA TCAATAAAAT GTGTTTACAC TATTTGATTC AATGAACATT GACCAGGATT ACTGTTGGAT ACTAAAGACT TATATAACTA  CAAAATATAG CTTAACTTTG GTTTGAATAG TATTAAGTAT TAACTGTACT AGCATTTTAT TCATCTATAC TTTTTTTTTT GAACAAACTA TTCATCTATA CGTTACATAT CAAGTTTATT  GATTAATCAA TGCAAATAGT AATACATTCG GAAAATTAAT ATATATATAT AATAATAAGT TATATTTACT TTTTTCAGTT AATTTTAAAT TTTATTTATT TATAATAAAT CATGTTATTT  ATATTTTTAT ATTTGAATTT TTAAATAGAA TACATTATAT TAAGAAAAAA CACCAATTAT AAAAATACAA AGACCTAAAA ATCAATTTCA TTAATATATG AAAATAATAT ACAATAATAA  TTCTCATAAT GACTATACCT ACCATACATT GTGACCAAAT AATAGTTACC GACTAACCAT TGTGACCAAA TACTAGTATT AGTTATGAAC GTATGAACGA TGATTTCATT AAAATCAGAT  AGAAAAAAAT GGTATTTGGA AGCTCACCAC CACACTTGCA CAAAACCCAT TTATAGAAAA GCATCCAGAA ATTAGAAATC ATCCTCGAAA ACCACCACAT CTCTTTTATA TAAACCAACA 
AAGTCTCTTC TTTCTTCCAT CACTGAAAAC CAAACACAAA GAAAAAAAAA TTAAAATTAA AAGAAAAATA AAAAAGAAGT 

Retrieve as FASTA  
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCTGTTT TCAATCCCCA TCTCATCCTC CACCTACTTC TCTTGACGGT GGTCACCGGA GAAATTCTCC GACCAAGATT CTACAGCGAA ACATGCCCTG AAGCTGAATC CATAGTAAGA  AGAGAAATGA AGAAAGCCAT GTTTAAAGAA GCAAGAAGCG TCGCTTCCGT TATGCGTCTC CAGTTTCACG ACTGTTTCGT CAATGTAACC CACAATGAAT CTTTTTCTCT CTTTTTGTTT  TTTTTTTCTG ATTATTTTTT GTGTAAGTGA CTCTCTAGGG ATGTGACGCG TCTGTGTTGC TTGACGACAC ACCGAACATG CTTGGTGAAA AACTATCACT TTCCAACATC AATTCACTTA  GATCATTCGA AGTTGTTGAC TACATTAAAG AAGCTCTAGA GAAAGCTTGT CCAGCTACTG TTTCTTGTGC TGACATCGTT ATCATGGCTT CTCGTGACGC CGTTGCTCTT GTAAAAAGAT  CTCTCACTCA ATAATCTCCC GGTTTAGTGA TTTTTTTGGT TTTGTAATTT TGGTTCTTGT GGAAAAACCA GACAGGAGGA CCGGACTGGG AAGTGAAGCT AGGGAGGAAA GACAGTTTAA  CAGCGAGTCA AAAAGATTCA GACGATATAA TGCCGAGTCC ACGAGCAAAC GCAACGTTCT TGATTGATCT CTTCAAAAGA TTCGATCTTT CTGTCAAAGA CATGGTGGCT TTATCTGGGT  CACACTCGAT TGGTCAAGGT CGGTGTTTTT CTATCATGTT TAGGCTTTAC AACCAATCCG GTTCTGGTAA ACCGGATCCA GTTCTCGAAC CGGTTTACAA GAAGAGGCTT AACAAGCTTT  GTCCATTGGG TGGAGACGAG AACGTGACCG GAGATCTAGA CGCAACACCA CATGTTTTTG ATAATCAGTA CTTCAAAGAC TTGGTCTCAG GGAGAGGGTT TCTTAACTCT GACCAGACTC  TTTACACGAG TAGAGAGACG AGGGAGTATG TGAAAAGGTT TAGTGAGGAT CAAGGTGAGT TCTTCGGGGC TTTTGCAGAA GGGATGGTGA AGCTGGGTGA TTTGCAATCT GGGAGACCTG 
GTGAGATTAG GTCTAACTGT AGGGTTGTTA ATAGAAGGCA TAATGATGTA TTGCTTGTCT CTTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCTGTTT TCAATCCCCA TCTCATCCTC CACCTACTTC TCTTGACGGT GGTCACCGGA GAAATTCTCC GACCAAGATT CTACAGCGAA ACATGCCCTG AAGCTGAATC CATAGTAAGA  AGAGAAATGA AGAAAGCCAT GTTTAAAGAA GCAAGAAGCG TCGCTTCCGT TATGCGTCTC CAGTTTCACG ACTGTTTCGT CAATGGATGT GACGCGTCTG TGTTGCTTGA CGACACACCG  AACATGCTTG GTGAAAAACT ATCACTTTCC AACATCAATT CACTTAGATC ATTCGAAGTT GTTGACTACA TTAAAGAAGC TCTAGAGAAA GCTTGTCCAG CTACTGTTTC TTGTGCTGAC  ATCGTTATCA TGGCTTCTCG TGACGCCGTT GCTCTTACAG GAGGACCGGA CTGGGAAGTG AAGCTAGGGA GGAAAGACAG TTTAACAGCG AGTCAAAAAG ATTCAGACGA TATAATGCCG  AGTCCACGAG CAAACGCAAC GTTCTTGATT GATCTCTTCA AAAGATTCGA TCTTTCTGTC AAAGACATGG TGGCTTTATC TGGGTCACAC TCGATTGGTC AAGGTCGGTG TTTTTCTATC  ATGTTTAGGC TTTACAACCA ATCCGGTTCT GGTAAACCGG ATCCAGTTCT CGAACCGGTT TACAAGAAGA GGCTTAACAA GCTTTGTCCA TTGGGTGGAG ACGAGAACGT GACCGGAGAT  CTAGACGCAA CACCACATGT TTTTGATAAT CAGTACTTCA AAGACTTGGT CTCAGGGAGA GGGTTTCTTA ACTCTGACCA GACTCTTTAC ACGAGTAGAG AGACGAGGGA GTATGTGAAA  AGGTTTAGTG AGGATCAAGG TGAGTTCTTC GGGGCTTTTG CAGAAGGGAT GGTGAAGCTG GGTGATTTGC AATCTGGGAG ACCTGGTGAG ATTAGGTCTA ACTGTAGGGT TGTTAATAGA 
AGGCATAATG ATGTATTGCT TGTCTCTTGA 

Retrieve as FASTA