Entry information : BrPrx39-1A_other (Bra035235 )
Entry ID 6908
Creation 2009-08-06 (Christophe Dunand)
Last sequence changes 2009-08-06 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-24 (Christophe Dunand)
Peroxidase information: BrPrx39-1A_other (Bra035235 )
Name (synonym) BrPrx39-1A_other (Bra035235 )
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx39-1A_other
start..stop
S start..stop
TsPrx39 611 0 1..326 1..326
CrubPrx89 597 0 1..326 1..326
BstrPrx83 596 0 1..326 1..326
AtPrx39 596 0 1..326 1..326
Literature and cross-references BrPrx39-1A_other (Bra035235 )
Literature Lee,S.C., Lim,M.H., Kim,J.A., Lee,S.I., Kim,J.S., Jin,M., Kwon,S.J., Mun,J.H., Kim,Y.K., Kim,H.U., Hur,Y. and Park,B.S. Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray. Mol Cells 26 (6), 595-605 (2008).
EST ref. GenBank:   EX110368.1 [5' end]   EX074339.1 [3' end]
Cluster/Prediction ref. UniGene:   Bra.21967
Protein sequence: BrPrx39-1A_other (Bra035235 )
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (303)
PWM (Da):   %s   35151.03 (32687.6) Transmb domain:   %s   i5-23o
PI (pH):   %s   8 (8.00) Peptide Signal:   %s   cut: 24 range:24-326
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MARFGLVFVT ILVILGLVSF SEAQLKLGFY DKTCPNAEKI VQAVVNQHIR NVPSLAAGLI RMHFHDCFVR GCDGSILINA TSSNQQVEKV APPNLTVRGF DFIDLVKTVL ERKCPGVVSC  ADIITLATRD SVAAIGGPTW NVPTGRRDGR ISNATEALNN IPPPFGNFST LITLFGNQGL DVKDLVLLSG AHTIGVSHCS SFSNRLFNFT GVGDQDPSLD SEYADNLKSR KCLSIADNTT 
QVEMDPGSRN TFDLSYFKLV LKRRGLFESD AALTKDPTAL GQVRGFAGGS LQDFFVEFGK SMEKMGRIGV KTGSDGEIRR TCSVVN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 3 ESTs.