Entry information : BrPrx25-1Ab_other (Bra000228)
Entry ID 6928
Creation 2009-08-12 (Christophe Dunand)
Last sequence changes 2009-08-12 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-24 (Christophe Dunand)
Peroxidase information: BrPrx25-1Ab_other (Bra000228)
Name (synonym) BrPrx25-1Ab_other (Bra000228)
Class Class III peroxidase    [Orthogroup: Prx006]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx25-1Ab_other
start..stop
S start..stop
TsPrx25 623 0 1..326 1..326
BrPrx25-1Aa_other 618 0 1..326 1..326
AalpPrx25 611 0 1..326 1..325
AlyPrx25 607 0 1..326 1..326
Literature and cross-references BrPrx25-1Ab_other (Bra000228)
Literature Lee,S.C., Lim,M.H., Kim,J.A., Lee,S.I., Kim,J.S., Jin,M., Kwon,S.J., Mun,J.H., Kim,Y.K., Kim,H.U., Hur,Y. and Park,B.S. Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray. Mol Cells 26 (6), 595-605 (2008).
DNA ref. GenBank:   AC232531.1 (118924..117531)
EST ref. GenBank:   EX070842.1 [Fragment]
Protein sequence: BrPrx25-1Ab_other (Bra000228)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (302)
PWM (Da):   %s   35378.99 (32694.6)  
PI (pH):   %s   6.98 (6.66) Peptide Signal:   %s   cut: 25 range:25-326
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGVYLGNYCF VMIIVLVLGK EVRSQSLKNG YYSSSCPRAE SIVRSTVESH FDSDPTISPG LLRLHFHDCF VQGCDGSVLI KGKKAEQAAL ANGGLRGFEV IDDAKAQLEL ECPGVVSCAD  ILALAARDAV DLSSGPSWRV PTGRKDGRIS LASEASNLPS PFDSVAVQKQ KFEAKGLDAH DLVTLLGAHT IGQTDCLFFR YRLYNYTVTG NSDPTISPSF LTQLKTLCPP NGDPSKRVAL 
DIGSPSKFDV SFFKNLRDGN GILESDQRLW SDSETNDVVR KYASTIRGLL GLRFDKEFGQ AMVKMSSIEV KTDVDGEVRK VCSKIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 1 EST. Cultivar="Chiifu", sub_species="pekinensis".