Entry information : SmPrx21-1_79 (SmPrx21a_79)
Entry ID 7006
Creation 2009-12-02 (Christophe Dunand)
Last sequence changes 2009-12-02 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-09-04 (Qiang Li)
Peroxidase information: SmPrx21-1_79 (SmPrx21a_79)
Name (synonym) SmPrx21-1_79 (SmPrx21a_79)
Class Class III peroxidase    [Orthogroup: Prx029]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx21-1_79
start..stop
S start..stop
SmPrx21-2_30 672 0 1..328 1..328
GbPrx05 415 1e-146 10..327 17..336
PabPrx86 407 2e-143 7..328 4..327
PsiPrx02 394 1e-138 4..327 10..333
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 691489..691704 216 N° 2 691224..691418 195 N° 3 690947..691112 166 N° 4 690487..690896 410
complement(join(690487..690896,690947..691112,691224..691418,691489..691704))


exon

Literature and cross-references SmPrx21-1_79 (SmPrx21a_79)
DNA ref. Phytozome 11:   scaffold_79 (691704..690487)
Protein sequence: SmPrx21-1_79 (SmPrx21a_79)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (303)
PWM (Da):   %s   34952.67 (32393.2)  
PI (pH):   %s   7.38 (7.36) Peptide Signal:   %s   cut: 26 range:26-328
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLVPVQASCLVALLLLLLFGSGIHAQLSPGYYSSSCPNVESIIQQVMLQKFKITPNSVPGTLRLFFHDCFVDGCDASVLIASTASNSAEKDSEINLSLAGDGFDSVIKAKAAVEEKCPGIVSCADILAIATRDLVVLAGGPSWTVRKGRKDGKISQASRVDGNLPKPEQSVDQLTKLFASKGLSQTDMVALSGAHTIGFAHCKEFMSRIYNFNSTHQFDPAMDPNFAKDLRLTCPQSVDPRVVANNDVTTPAKFDNVYYQNAVRGVTVLASDQILHSDARTRGLVTAYAGQQGAFFAAFATAMDNLGAVGVKTGNQGEIRKDCSRFNS

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST. Incorrect transcript prediction from JGI (little splicing error for the intron 2).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTAGTACCAGTCCAGGCCTCTTGTCTTGTTGCTTTGCTGCTGCTACTCCTCTTTGGATCCGGCATTCATGCCCAGCTCTCTCCAGGCTACTACAGCAGCTCCTGCCCCAATGTGGAG
TCTATCATCCAGCAAGTGATGCTCCAGAAATTCAAGATCACACCCAACAGCGTCCCTGGCACGCTGCGGCTCTTCTTCCACGACTGCTTTGTCGAT
GTAAGTCCAATCTCCCTGTAAGTT
CTATCCCCTTCAAAAGTCTGAGTTTTCGAATGGAATTCGGCCGCAGGGATGCGATGCCTCGGTGCTCATCGCTTCCACGGCCAGCAACAGCGCAGAGAAGGATTCCGAGATCAACTTGTC
GCTGGCAGGCGATGGCTTCGACTCGGTCATCAAAGCCAAAGCTGCTGTTGAGGAGAAGTGCCCCGGGATCGTCTCTTGCGCGGACATTCTCGCCATTGCGACCAGGGACCTCGTTGTGCT
G
GCGAGTGATTCTCCTCCATCTTATCTTCGTGTCCAAGGAAAAAAAATTCCTTTTTTTCTCTTGGTCTTTGTTCTCCGAATTTTTTTCTTGCATTGATTGTCGGGATGGCAGGCAGGAGG
ACCATCTTGGACAGTGAGGAAAGGCCGCAAAGATGGAAAGATCTCGCAAGCTTCAAGAGTCGACGGTAACTTGCCAAAGCCCGAGCAATCGGTCGACCAGCTCACCAAGCTCTTCGCTTC
CAAAGGACTCTCTCAAACGGACATGGTGGCTCTCTCAG
GTGAACTCCCTTCTCCTTCCTCTATCAAACTCACCAAAGAAATCTCTCAGGAGCTCACACCATCGGCTTCGCTCACTGCAAG
GAATTCATGAGCCGGATCTACAACTTCAACAGCACTCACCAATTCGATCCCGCAATGGATCCCAACTTCGCCAAGGATTTGCGGCTCACTTGCCCCCAGTCAGTGGATCCAAGAGTGGTC
GCCAACAACGACGTGACCACCCCCGCCAAATTCGACAACGTCTACTACCAAAACGCTGTGAGAGGAGTCACGGTGCTCGCCTCGGACCAAATCCTCCACAGCGACGCTAGAACAAGGGGC
CTCGTCACGGCATACGCCGGCCAGCAGGGCGCATTCTTCGCCGCGTTCGCCACCGCCATGGACAACCTGGGAGCCGTCGGCGTCAAGACTGGAAACCAGGGAGAAATCCGAAAGGACTGC
TCCAGATTCAACAGCTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTAGTACCAGTCCAGGCCTCTTGTCTTGTTGCTTTGCTGCTGCTACTCCTCTTTGGATCCGGCATTCATGCCCAGCTCTCTCCAGGCTACTACAGCAGCTCCTGCCCCAATGTGGAG
TCTATCATCCAGCAAGTGATGCTCCAGAAATTCAAGATCACACCCAACAGCGTCCCTGGCACGCTGCGGCTCTTCTTCCACGACTGCTTTGTCGAT
GGATGCGATGCCTCGGTGCTCATC
GCTTCCACGGCCAGCAACAGCGCAGAGAAGGATTCCGAGATCAACTTGTCGCTGGCAGGCGATGGCTTCGACTCGGTCATCAAAGCCAAAGCTGCTGTTGAGGAGAAGTGCCCCGGGATC
GTCTCTTGCGCGGACATTCTCGCCATTGCGACCAGGGACCTCGTTGTGCTG
GCAGGAGGACCATCTTGGACAGTGAGGAAAGGCCGCAAAGATGGAAAGATCTCGCAAGCTTCAAGAGTC
GACGGTAACTTGCCAAAGCCCGAGCAATCGGTCGACCAGCTCACCAAGCTCTTCGCTTCCAAAGGACTCTCTCAAACGGACATGGTGGCTCTCTCAG
GAGCTCACACCATCGGCTTCGCT
CACTGCAAGGAATTCATGAGCCGGATCTACAACTTCAACAGCACTCACCAATTCGATCCCGCAATGGATCCCAACTTCGCCAAGGATTTGCGGCTCACTTGCCCCCAGTCAGTGGATCCA
AGAGTGGTCGCCAACAACGACGTGACCACCCCCGCCAAATTCGACAACGTCTACTACCAAAACGCTGTGAGAGGAGTCACGGTGCTCGCCTCGGACCAAATCCTCCACAGCGACGCTAGA
ACAAGGGGCCTCGTCACGGCATACGCCGGCCAGCAGGGCGCATTCTTCGCCGCGTTCGCCACCGCCATGGACAACCTGGGAGCCGTCGGCGTCAAGACTGGAAACCAGGGAGAAATCCGA
AAGGACTGCTCCAGATTCAACAGCTAG

Retrieve as FASTA