Entry information : BrPrx65-1Ab_other (Bra024972)
Entry ID 709
Creation 2008-12-01 (Christophe Dunand)
Last sequence changes 2008-12-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-23 (Christophe Dunand)
Peroxidase information: BrPrx65-1Ab_other (Bra024972)
Name (synonym) BrPrx65-1Ab_other (Bra024972)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue types Buds
Flowers
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx65-1Ab_other
start..stop
S start..stop
BnPrx65-2_other 669 0 1..330 1..330
TsPrx65 643 0 1..330 1..330
BnPrx65-1_other 636 0 1..330 1..327
BrPrx65-1Aa_other 629 0 1..330 1..331
Literature and cross-references BrPrx65-1Ab_other (Bra024972)
Literature Kwon,S.J., Kim,J.A., Mun,J.H., Park,T.H., Hong,J.K., Kim,J.S., Jin,M., Lim,M.H., Lee,S.C., Seol,Y.J., Lee,S.I., Yang,T.J., Park,J.Y. and Park,B.S. Shotgun sequence of a Brassica rapa BAC clone.
DNA ref. GenBank:   AC189245.2 (7956..8964)
mRNA ref. GenBank:   GQ258783.1
Cluster/Prediction ref. UniGene:   Bra.19108
Protein sequence: BrPrx65-1Ab_other (Bra024972)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (306)
PWM (Da):   %s   36388.39 (33870.9) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.26 (6.84) Peptide Signal:   %s   cut: 25 range:25-330
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRLSRSPTPF VLLLLVVVAP AVSADVAILR TDYYQKTCPD FNKIVREAVL TKQSQQPTTA AGTLRLFFHD CFLEGCDASV LIATNSFNKA ERDDDLNDSL PGDAFDIVNR IKTALELSCP  GVVSCADILA QATRDLVTMV GGPYFDVKLG RKDGHESKAH KVRGNVPMPN QTVHDIHGMF KKNGFSLREM VALSGAHTIG FSHCKEFSDR LYGSKADPEI NPRFATALKE LCKNHTVDDT 
IAAFNDVMTP GKFDNMYFKN LKRGLGLLAS DHLLIKDNST KPFVELYATD EKAFFEDFAR AMEKLGTVGV KGNGEGEVRR RCDHFNNLNV 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and 30 ESTs. Incorrect prediction from Phytozome (missing fragment due to an extra intron).