Entry information : CanPrx18 (CanPOD)
Entry ID 7165
Creation 2010-01-22 (Cyril Jourda)
Last sequence changes 2012-05-03 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-05-03 (Christophe Dunand)
Peroxidase information: CanPrx18 (CanPOD)
Name (synonym) CanPrx18 (CanPOD)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Capsicum
Organism Capsicum annuum (pepper)    [TaxId: 4072 ]
Cellular localisation N/D
Tissue types Barks
Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CanPrx18
start..stop
S start..stop
NtPrx11-1A 580 0 1..324 1..321
LePrx11 580 0 1..324 1..322
StPrx47 575 0 1..324 1..322
NtPrx78-1A 557 0 8..324 6..319
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 68..1042 975  
join(68..1042)


exon

Literature and cross-references CanPrx18 (CanPOD)
Literature REFERENCE 1. Gong,Z., Liu,K. and Li,D. Capsicum annuum CanPOD mRNA for peroxidase. Unpublished
Protein ref. GenBank:   ACM47317.1
mRNA ref. GenBank:   FJ596178
Cluster/Prediction ref. UniGene:   Can.12295
Protein sequence: CanPrx18 (CanPOD)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   324 (297)
PWM (Da):   %s   34798.46 (31893.9) Transmb domain:   %s   i9-31o
PI (pH):   %s   9.37 (9.15) Peptide Signal:   %s   cut: 28 range:28-324
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFSKNNTPI VFLFLVVVNL LIVSSSAQLS TNFYSKSCPK LFQTVKSTVQ SAINRETRMG ASLLRLFFHD CFVNGCDGSL LLDDTSSFTG EKRAAPNVNS VRGFEVIDNI KSAVEKACPG  VVSCADILAI TARDSVVILG GPNWNVKLGR RDARTASQGA ANSSIPPPTS NLNQLISSFS AVGLSTTDMV ALSGAHTIGQ ARCTSFRARI YNETNNIDSS FATTRQRNCP RNSGSGDNNL 
APLDLQTPTK FDNNYFKNLV SKRGLLHSDQ QLFNGGSADS IVTSYSNNPS SFSSDFVTAM IKMGDNRPLT GSNGEIRKNC RTRN 

Retrieve as FASTA  
Remarks Complete sequence from mRNA and 3 ESTs.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTTT CAAAAAATAA TACTCCGATA GTTTTTTTAT TTTTGGTTGT TGTGAACTTA CTAATTGTAA GTTCATCAGC TCAACTTTCA ACTAATTTCT ACTCAAAATC ATGTCCTAAA  CTTTTTCAAA CAGTGAAATC AACAGTGCAA TCAGCTATTA ACAGGGAAAC CCGAATGGGG GCTTCTCTGC TTCGCCTTTT CTTCCATGAT TGCTTCGTCA ATGGATGTGA TGGATCACTG  CTCCTTGATG ACACATCAAG CTTCACTGGA GAGAAGAGGG CTGCACCAAA TGTGAATTCT GTTAGAGGAT TTGAAGTCAT TGACAATATC AAATCTGCTG TAGAAAAAGC ATGCCCTGGT  GTTGTTTCTT GTGCTGATAT TTTGGCCATT ACTGCTAGGG ACTCTGTTGT CATTCTTGGA GGGCCAAATT GGAATGTAAA ATTGGGCAGA AGAGATGCCA GGACAGCAAG CCAAGGTGCT  GCCAATAGCA GCATTCCTCC TCCTACTTCT AACCTTAATC AACTCATCTC TAGTTTTAGT GCTGTTGGCC TTTCAACTAC AGACATGGTT GCCTTATCAG GTGCTCACAC AATTGGACAA  GCAAGGTGCA CATCATTCAG GGCACGTATA TACAATGAGA CCAACAACAT AGACTCATCA TTTGCAACAA CAAGGCAAAG AAATTGCCCA AGAAACTCAG GTTCAGGTGA CAACAACTTA  GCACCACTTG ATCTCCAAAC ACCTACAAAA TTCGACAACA ATTATTTCAA GAACTTAGTG AGCAAAAGAG GTCTGTTACA TTCTGATCAA CAATTGTTCA ATGGTGGATC AGCTGATTCG  ATCGTTACGT CTTACAGTAA CAATCCTAGT AGTTTCAGCT CTGATTTTGT TACTGCTATG ATCAAGATGG GTGACAATCG TCCACTTACT GGATCTAATG GAGAAATTAG GAAGAATTGT 
CGTACGAGAA ATTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTTT CAAAAAATAA TACTCCGATA GTTTTTTTAT TTTTGGTTGT TGTGAACTTA CTAATTGTAA GTTCATCAGC TCAACTTTCA ACTAATTTCT ACTCAAAATC ATGTCCTAAA  CTTTTTCAAA CAGTGAAATC AACAGTGCAA TCAGCTATTA ACAGGGAAAC CCGAATGGGG GCTTCTCTGC TTCGCCTTTT CTTCCATGAT TGCTTCGTCA ATGGATGTGA TGGATCACTG  CTCCTTGATG ACACATCAAG CTTCACTGGA GAGAAGAGGG CTGCACCAAA TGTGAATTCT GTTAGAGGAT TTGAAGTCAT TGACAATATC AAATCTGCTG TAGAAAAAGC ATGCCCTGGT  GTTGTTTCTT GTGCTGATAT TTTGGCCATT ACTGCTAGGG ACTCTGTTGT CATTCTTGGA GGGCCAAATT GGAATGTAAA ATTGGGCAGA AGAGATGCCA GGACAGCAAG CCAAGGTGCT  GCCAATAGCA GCATTCCTCC TCCTACTTCT AACCTTAATC AACTCATCTC TAGTTTTAGT GCTGTTGGCC TTTCAACTAC AGACATGGTT GCCTTATCAG GTGCTCACAC AATTGGACAA  GCAAGGTGCA CATCATTCAG GGCACGTATA TACAATGAGA CCAACAACAT AGACTCATCA TTTGCAACAA CAAGGCAAAG AAATTGCCCA AGAAACTCAG GTTCAGGTGA CAACAACTTA  GCACCACTTG ATCTCCAAAC ACCTACAAAA TTCGACAACA ATTATTTCAA GAACTTAGTG AGCAAAAGAG GTCTGTTACA TTCTGATCAA CAATTGTTCA ATGGTGGATC AGCTGATTCG  ATCGTTACGT CTTACAGTAA CAATCCTAGT AGTTTCAGCT CTGATTTTGT TACTGCTATG ATCAAGATGG GTGACAATCG TCCACTTACT GGATCTAATG GAGAAATTAG GAAGAATTGT 
CGTACGAGAA ATTAG 

Retrieve as FASTA