Entry information : NtPrx18-1A (NtPrx18a)
Entry ID 7239
Creation 2010-02-22 (Christophe Dunand)
Last sequence changes 2011-04-26 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-04-26 (Christophe Dunand)
Peroxidase information: NtPrx18-1A (NtPrx18a)
Name (synonym) NtPrx18-1A (NtPrx18a)
Class Class III peroxidase     [Orthogroup: Prx011]*
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Nicotiana
Organism Nicotiana tabacum    [TaxId: 4097 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value NtPrx18-1A
start..stop
S start..stop
NtPrx18-1B 564 0 1..319 1..327
StPrx08 446 3e-159 1..319 1..322
LePrx46 446 3e-159 1..319 1..322
VvPrx31 441 2e-157 1..319 1..327
Literature and cross-references NtPrx18-1A (NtPrx18a)
EST ref. GenBank:   FS393379.1 [5' end]   AM847206.1 [3' end]
Cluster/Prediction ref. UniGene:   Nta.25851 [5' end]
Protein sequence: NtPrx18-1A (NtPrx18a)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   319 (293)
PWM (Da):   %s   32664.95 (29757.3) Transmb domain:   %s   i7-29o
PI (pH):   %s   9.69 (9.68) Peptide Signal:   %s   cut: 27 range:27-319
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAFSRHIVVL ILQLMLVPLA FNLCNAQGLK YGFYSKTCPG VESIVRKTTA QFISKAPTLA APLLRMQFHD CFVRGCDGSV MLNSTKNNQA ERDAIPNQSL RGFQVINGVK SALENKCPGV  VSCADIVALV ARDAVSMING PYWKVLLGRR DGRVSIMLEA LTLLPPPFAN ISTLKSQFAS VGLNAKxxxx xxxxxxxxxx xxxxxxNGDA DPTMDPNYIA GLKLKCSPTD VTTLVEMDTG 
SFKTFDEKYY TLVAKRRGLF QSDSALLDDI ETRAYVKRQA LTHGKTFFKD FAKSMVKMGK IGVLTGQAGE IRKHCDFVN 

Retrieve as FASTA  
Remarks Partial sequence from 3 +1 ESTs (FS389410.1, FS389784.1) and GSS. No overlap between the 3' and 5' => NtPrx 18b has beenused as a template.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAACATTGGG AAATAGAGAA AAATAAATCA ACTTTATTTC CTACTTCTAA CAATACAATG GCTTTCTCAA GGCATATTGT AGTGCTCATT CTTCAATTGA TGCTTGTCCC TCTTGCCTTT  AACCTTTGTA ATGCACAAGG CTTGAAATAT GGCTTCTACA GCAAAACATG TCCTGGAGTT GAATCAATTG TGAGAAAGAC AACTGCTCAA TTCATATCTA AGGCACCAAC TCTAGCTGCT  CCTTTGCTTA GGATGCAGTT CCATGATTGC TTTGTTAGGG GATGTGATGG TTCTGTAATG CTAAACTCAA CCAAGAATAA TCAAGCTGAG AGAGATGCCA TTCCAAACCA ATCTCTAAGA  GGATTCCAAG TGATTAATGG TGTAAAATCT GCACTAGAAA ACAAGTGTCC AGGTGTTGTA TCTTGTGCAG ATATCGTAGC CTTAGTAGCT CGGGATGCAG TTTCTATGAT TAACGGACCA  TATTGGAAAG TTCTTTTGGG AAGAAGAGAT GGGAGAGTGT CAATCATGTT AGAAGCCTTG ACCCTTTTAC CACCTCCATT TGCTAACATC TCAACCCTTA AATCACAGTT TGCCTCTGTT 
GGTTTGAATG CAAAAGA 

Retrieve as FASTA