Entry information : LaaPxDo
Entry ID 7244
Creation 2010-02-23 (Marcel Zamocky)
Last sequence changes 2016-03-02 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-03-02 (Achraf Jemmat)
Peroxidase information: LaaPxDo
Name LaaPxDo
Class Short peroxidockerin    [Orthogroup: PxDo001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhodobacteraceae Labrenzia
Organism Labrenzia alexandrii    [TaxId: 388408 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LaaPxDo
start..stop
S start..stop
RbaYPxDo 596 0 81..679 5..623
PlmaPxDo01 482 8e-161 40..528 96..588
BmaPxDo01 459 6e-154 40..535 22..519
LspPxDo01 427 2e-141 36..528 140..661
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3972433..3974502 2070  
complement(join(3972433..3974502))


exon

Literature and cross-references LaaPxDo
Literature Wagner-Dobler I., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Protein ref. GenBank:   EEE43274.1 UniProtKB:   B9R463
DNA ref. GenBank:   EQ973121.1 (3974502..3972433)
Protein sequence: LaaPxDo
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   689
PWM (Da):   %s   72801.41  
PI (pH):   %s   3.73
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPRSSQDQRR DQQNPDQPQN QQSASNTLAQ IQANLVAALE TRSIDGSSSH ETNIDWGSAG QQMLRLTDAN YTDGIGSIAT DLPNARAVSN AVAQQTEDEP NSFGLSDMFW VWGQFIDHDI  TLTGSEGFEF APIVVPAGDS DFDPTGTGEA IIPFTRAGFD DVTGATSARQ YSNEITTFID ASMVYGSDAE TAAALRGDGG TLRLTDNDLL IEPETGGVLA GEVRAAENVA LTSMHTLFAR  EHNLWVDRLA RQDPSMNSDE LYDAARIIIE AEIQAITYNE FLPLLLGENA ITDYAGYNPD INPGISVEFA TAAFRFGHSL LSSSIQRLDR DGDTIAAGDL SLSEAFFNPS EIAENGGIDP  LLRGLADGMA QELDTHIVED VRSFLFGAPG SGGLDLAALN IERGRDLGVA SYNDLREALG LQRAANFSDI TSDATLAAQL ASIYGSVDQV DAWIGGLAED PSGSGIVGEL FATILLDQFL  RLRDGDPFWS QGLDLPQAQI DALWSTTLAD VIERNTDIRS IQDNVMLAHD RLGGTNRDDA LVGSEERDLI LGNRGNDVLD GAGGDDQLEG QDGNDVLFGQ AGNDILYGGD GNDVLVGGTG 
NDTLDGGRGS DAFVFDGAFG SDTVTDFSTS NRNGDILQIG VAGFSSSAEI LALAADTDAG AVLSFSDNLS ITLLGVSVSQ LDASDIQII 

Retrieve as FASTA  
Remarks complete from genomic (no intron), strain="DFL-11".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTCGGT CCAGTCAAGA TCAACGCCGC GATCAGCAAA ATCCGGATCA ACCCCAAAAC CAGCAAAGCG CGTCGAACAC TTTGGCTCAG ATTCAGGCAA ACCTTGTCGC GGCTCTTGAA  ACCCGGTCCA TTGACGGATC CTCCAGTCAT GAGACCAATA TCGACTGGGG ATCTGCCGGC CAGCAAATGC TGCGCCTGAC AGATGCGAAC TACACAGACG GCATCGGCTC TATCGCAACA  GACCTTCCCA ACGCCCGAGC GGTCAGTAAT GCGGTTGCGC AGCAAACGGA AGACGAACCC AATTCCTTTG GCCTAAGTGA CATGTTCTGG GTCTGGGGCC AATTCATCGA TCATGACATC  ACACTCACCG GAAGCGAGGG ATTTGAATTC GCGCCGATTG TTGTACCTGC TGGCGACAGC GACTTTGACC CGACCGGAAC CGGTGAAGCG ATCATACCGT TTACACGCGC GGGATTTGAT  GATGTAACCG GAGCCACGTC CGCACGGCAA TACAGCAACG AAATCACCAC ATTTATCGAT GCCTCCATGG TCTACGGATC AGATGCCGAA ACTGCCGCCG CGCTGCGCGG GGACGGTGGA  ACGTTGCGCC TTACGGACAA CGATCTCCTC ATTGAACCGG AAACAGGTGG CGTGTTGGCC GGCGAGGTGC GCGCAGCGGA AAATGTCGCT CTGACATCCA TGCACACTCT GTTTGCCCGC  GAGCATAACC TCTGGGTGGA CCGGCTGGCC CGCCAGGACC CAAGCATGAA TTCAGATGAG CTTTACGATG CCGCACGCAT CATCATTGAA GCTGAAATCC AGGCAATCAC CTATAACGAG  TTTTTGCCGC TCCTCTTGGG AGAGAATGCC ATCACGGACT ACGCCGGGTA TAATCCAGAT ATCAATCCTG GCATTTCGGT CGAATTTGCA ACTGCGGCTT TCCGCTTTGG CCACAGCCTC  TTGTCATCCA GCATTCAAAG GTTGGACCGG GATGGCGATA CCATTGCCGC CGGAGATCTC TCTTTGAGTG AAGCGTTTTT CAACCCGTCG GAGATCGCAG AGAATGGAGG CATCGATCCC  CTTCTGCGCG GACTTGCAGA TGGCATGGCG CAAGAGTTGG ACACACACAT CGTCGAGGAT GTGCGGTCCT TCCTGTTTGG CGCTCCAGGC TCTGGCGGCC TGGACCTGGC CGCCCTGAAC  ATCGAACGCG GCCGGGATCT TGGGGTCGCC AGCTACAACG ACCTGCGCGA GGCTCTTGGC TTGCAACGCG CAGCAAACTT CTCGGATATA ACGTCAGATG CCACATTGGC CGCACAACTG  GCCAGCATTT ACGGATCCGT CGATCAAGTC GATGCCTGGA TCGGCGGACT TGCAGAGGAC CCTTCGGGCA GCGGGATTGT TGGAGAGTTG TTCGCCACGA TCCTCCTTGA TCAGTTTTTG  CGGTTGCGCG ACGGCGACCC TTTCTGGAGC CAGGGCCTAG ATCTTCCTCA GGCTCAGATT GACGCTCTGT GGTCCACCAC GCTGGCCGAC GTGATCGAAC GCAACACGGA CATCCGCTCC  ATTCAGGACA ACGTGATGCT CGCTCACGAC CGCCTCGGCG GAACCAATCG CGATGATGCT CTGGTCGGTT CGGAAGAGAG AGACCTGATC CTGGGCAATC GCGGCAACGA CGTTCTGGAC  GGCGCCGGCG GAGACGATCA ACTGGAGGGA CAGGACGGAA ACGATGTCCT GTTCGGCCAG GCCGGAAACG ACATTCTTTA TGGCGGCGAT GGCAATGATG TGCTGGTCGG CGGCACGGGC  AACGACACCC TCGATGGCGG GCGCGGCAGT GACGCCTTTG TTTTTGACGG AGCTTTCGGA TCAGACACTG TGACCGATTT CAGCACCAGT AACCGCAACG GTGACATCCT TCAGATCGGG  GTCGCAGGTT TCTCGTCATC TGCCGAAATC CTGGCGCTCG CCGCGGACAC CGACGCCGGG GCCGTTCTCA GTTTCTCAGA CAACCTGTCG ATCACCCTGC TGGGCGTTTC CGTTTCGCAG 
TTGGACGCAT CGGATATTCA GATCATCTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTCGGT CCAGTCAAGA TCAACGCCGC GATCAGCAAA ATCCGGATCA ACCCCAAAAC CAGCAAAGCG CGTCGAACAC TTTGGCTCAG ATTCAGGCAA ACCTTGTCGC GGCTCTTGAA  ACCCGGTCCA TTGACGGATC CTCCAGTCAT GAGACCAATA TCGACTGGGG ATCTGCCGGC CAGCAAATGC TGCGCCTGAC AGATGCGAAC TACACAGACG GCATCGGCTC TATCGCAACA  GACCTTCCCA ACGCCCGAGC GGTCAGTAAT GCGGTTGCGC AGCAAACGGA AGACGAACCC AATTCCTTTG GCCTAAGTGA CATGTTCTGG GTCTGGGGCC AATTCATCGA TCATGACATC  ACACTCACCG GAAGCGAGGG ATTTGAATTC GCGCCGATTG TTGTACCTGC TGGCGACAGC GACTTTGACC CGACCGGAAC CGGTGAAGCG ATCATACCGT TTACACGCGC GGGATTTGAT  GATGTAACCG GAGCCACGTC CGCACGGCAA TACAGCAACG AAATCACCAC ATTTATCGAT GCCTCCATGG TCTACGGATC AGATGCCGAA ACTGCCGCCG CGCTGCGCGG GGACGGTGGA  ACGTTGCGCC TTACGGACAA CGATCTCCTC ATTGAACCGG AAACAGGTGG CGTGTTGGCC GGCGAGGTGC GCGCAGCGGA AAATGTCGCT CTGACATCCA TGCACACTCT GTTTGCCCGC  GAGCATAACC TCTGGGTGGA CCGGCTGGCC CGCCAGGACC CAAGCATGAA TTCAGATGAG CTTTACGATG CCGCACGCAT CATCATTGAA GCTGAAATCC AGGCAATCAC CTATAACGAG  TTTTTGCCGC TCCTCTTGGG AGAGAATGCC ATCACGGACT ACGCCGGGTA TAATCCAGAT ATCAATCCTG GCATTTCGGT CGAATTTGCA ACTGCGGCTT TCCGCTTTGG CCACAGCCTC  TTGTCATCCA GCATTCAAAG GTTGGACCGG GATGGCGATA CCATTGCCGC CGGAGATCTC TCTTTGAGTG AAGCGTTTTT CAACCCGTCG GAGATCGCAG AGAATGGAGG CATCGATCCC  CTTCTGCGCG GACTTGCAGA TGGCATGGCG CAAGAGTTGG ACACACACAT CGTCGAGGAT GTGCGGTCCT TCCTGTTTGG CGCTCCAGGC TCTGGCGGCC TGGACCTGGC CGCCCTGAAC  ATCGAACGCG GCCGGGATCT TGGGGTCGCC AGCTACAACG ACCTGCGCGA GGCTCTTGGC TTGCAACGCG CAGCAAACTT CTCGGATATA ACGTCAGATG CCACATTGGC CGCACAACTG  GCCAGCATTT ACGGATCCGT CGATCAAGTC GATGCCTGGA TCGGCGGACT TGCAGAGGAC CCTTCGGGCA GCGGGATTGT TGGAGAGTTG TTCGCCACGA TCCTCCTTGA TCAGTTTTTG  CGGTTGCGCG ACGGCGACCC TTTCTGGAGC CAGGGCCTAG ATCTTCCTCA GGCTCAGATT GACGCTCTGT GGTCCACCAC GCTGGCCGAC GTGATCGAAC GCAACACGGA CATCCGCTCC  ATTCAGGACA ACGTGATGCT CGCTCACGAC CGCCTCGGCG GAACCAATCG CGATGATGCT CTGGTCGGTT CGGAAGAGAG AGACCTGATC CTGGGCAATC GCGGCAACGA CGTTCTGGAC  GGCGCCGGCG GAGACGATCA ACTGGAGGGA CAGGACGGAA ACGATGTCCT GTTCGGCCAG GCCGGAAACG ACATTCTTTA TGGCGGCGAT GGCAATGATG TGCTGGTCGG CGGCACGGGC  AACGACACCC TCGATGGCGG GCGCGGCAGT GACGCCTTTG TTTTTGACGG AGCTTTCGGA TCAGACACTG TGACCGATTT CAGCACCAGT AACCGCAACG GTGACATCCT TCAGATCGGG  GTCGCAGGTT TCTCGTCATC TGCCGAAATC CTGGCGCTCG CCGCGGACAC CGACGCCGGG GCCGTTCTCA GTTTCTCAGA CAACCTGTCG ATCACCCTGC TGGGCGTTTC CGTTTCGCAG 
TTGGACGCAT CGGATATTCA GATCATCTGA 

Retrieve as FASTA