Entry information : RbaYPxDo
Entry ID 7245
Creation 2010-02-23 (Marcel Zamocky)
Last sequence changes 2016-03-02 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-03-02 (Achraf Jemmat)
Peroxidase information: RbaYPxDo
Name RbaYPxDo
Class Short peroxidockerin    [Orthogroup: PxDo001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria
Organism Rhodobacterales bacterium Y4I    [TaxId: 439496 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RbaYPxDo
start..stop
S start..stop
LaaPxDo 582 0 5..623 81..679
PlmaPxDo01 433 1e-142 2..443 135..588
BmaPxDo01 397 1e-130 1..474 60..543
RbaPxDo02 401 3e-130 2..450 239..699
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 578200..580101 1902  
complement(join(578200..580101))


exon

Literature and cross-references RbaYPxDo
Literature Moran M.A., Buchan A., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases
Protein ref. UniProtKB:   B6B8N6
DNA ref. GenBank:   DS995281.1 (580101..578200)
Protein sequence: RbaYPxDo
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   633
PWM (Da):   %s   66834.74  
PI (pH):   %s   4.1
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGADRPNPR EVSNILSAQT RETANAAGAS DFLWIWGQFL DHDLSLTGTE SGVRANIEVP AGDLFFDPFG TGNAIIPFTR VEQHDGEFLN EITACIDASM IYGSTAEMVA AMRGEGGKLK  MTEDHFLNLE GDGFLTGDVR AAENVALTSM HTLFTREHNR LVEELADRDP SLTDDQLFEA ARARVEALVQ AITFKEFLPV LLGDNAFGAY QGHDPDVNPG IAIEFSSAVY RLGHTLLSAN  LQRVTENGTL LDPLALRDAF FQPHLVSQTG MVENVLRGAA TQTSEAIDTQ VVEDVRSFLF GPPGAGGLDL AALNIQRGRD MGVASYNDLR EALGLPRAER FSDITSDAVL AAKLEEAYGD  TDLVDAWIGG LAEDAFGSGL LGQTFSLVMI DQFTRLRDGD PFWSEGREGI PADELKALWD TALSDVILRN TDVQNLQKDA FAAMDRIAGT AGDDVLSGNS GRDFIFGRKG ADVLSGKSGD  DDLQGGGGRD ILSGNRGSDC LDGGSGADRL KGGGAADFLS GGSHNDILKG GSGRDTLEGG TGNDTLAGGK GNDVLTGGAG ADCFVFNTLK TGADTISDFE LGVDRTKIIG PHTWSAQAMD 
TDDGLVFAFA DGCSVTFQGI TLSDWQDAGA SFF 

Retrieve as FASTA  
Remarks complete sequence from genomic. strain="Y4l". Annotated as "COG2931 RTX toxins and related Ca2+-binding proteins".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGCG CAGACCGTCC GAACCCGCGC GAAGTGTCAA ACATACTGTC CGCCCAGACC AGGGAAACGG CAAACGCCGC CGGAGCGTCT GACTTCCTTT GGATCTGGGG CCAGTTTCTG  GACCATGACT TGTCGCTGAC CGGCACCGAA AGCGGCGTCC GCGCGAATAT TGAAGTTCCG GCAGGCGATC TCTTCTTCGA TCCCTTCGGC ACCGGAAACG CCATCATTCC GTTCACCCGG  GTAGAACAGC ACGACGGGGA ATTCCTCAAT GAGATCACCG CCTGCATCGA CGCCTCGATG ATCTATGGCT CCACCGCAGA GATGGTCGCA GCGATGCGGG GCGAAGGCGG CAAACTGAAG  ATGACCGAGG ATCATTTCCT GAACCTCGAA GGCGACGGAT TCCTGACTGG CGATGTCCGC GCCGCAGAAA ACGTCGCGCT GACCTCGATG CACACCCTGT TCACCCGCGA ACACAACCGG  CTGGTCGAAG AGCTGGCGGA CAGGGATCCG TCGCTGACGG ATGATCAGCT GTTTGAGGCC GCCCGCGCCC GGGTCGAGGC GCTGGTGCAA GCCATCACGT TCAAGGAGTT TCTGCCGGTC  CTGCTGGGCG ATAATGCCTT TGGCGCCTAC CAGGGCCATG ACCCGGATGT GAATCCGGGG ATTGCGATTG AATTCTCCAG CGCCGTCTAC CGGCTCGGGC ACACCCTGCT GTCGGCCAAC  CTGCAGCGTG TCACCGAAAA CGGCACCCTG CTGGACCCGC TGGCACTGCG CGATGCGTTT TTCCAGCCGC ATCTGGTCAG CCAGACAGGC ATGGTCGAAA ACGTCCTGCG CGGGGCGGCC  ACCCAGACTT CCGAAGCCAT CGACACCCAA GTGGTGGAGG ACGTGCGCTC CTTCCTGTTC GGGCCGCCGG GCGCCGGCGG GCTGGATCTG GCGGCGCTGA ACATCCAGCG CGGGCGCGAC  ATGGGGGTGG CCAGCTATAA TGACCTGCGC GAGGCCCTGG GCCTGCCGCG CGCGGAACGC TTCTCTGACA TTACCTCCGA CGCGGTGCTG GCCGCCAAGC TGGAAGAGGC TTATGGCGAT  ACCGATCTGG TGGACGCCTG GATTGGCGGC CTGGCCGAGG ACGCCTTTGG CAGCGGGCTG CTGGGGCAGA CGTTCTCGCT TGTCATGATT GATCAGTTCA CCCGGCTGCG CGACGGCGAC  CCGTTCTGGA GCGAGGGCCG CGAAGGCATC CCGGCAGACG AGCTGAAGGC GCTTTGGGAC ACGGCGCTGT CTGACGTTAT CCTGCGCAAT ACGGATGTTC AGAACCTGCA GAAAGATGCC  TTTGCCGCAA TGGACAGGAT CGCAGGCACT GCCGGCGATG ATGTTCTCAG CGGCAACTCC GGGCGGGATT TCATCTTTGG CCGCAAGGGT GCGGATGTCC TCTCCGGCAA GTCCGGCGAT  GACGACCTGC AAGGGGGCGG CGGCAGGGAC ATCCTCTCCG GAAACCGGGG CAGCGACTGC CTGGACGGCG GCAGCGGCGC GGACAGGCTC AAGGGAGGCG GCGCGGCCGA CTTCCTGTCA  GGCGGCAGCC ACAACGACAT TCTGAAGGGC GGATCAGGCC GCGACACCCT GGAAGGCGGC ACCGGAAACG ACACCCTGGC CGGCGGCAAG GGAAATGATG TGCTGACCGG CGGTGCGGGC  GCGGACTGTT TCGTGTTCAA CACCCTGAAA ACGGGCGCGG ACACGATTTC AGACTTCGAG CTTGGCGTCG ACAGGACCAA AATCATCGGC CCGCACACCT GGTCCGCACA GGCGATGGAC 
ACGGACGACG GGCTGGTGTT TGCGTTCGCG GATGGCTGCT CCGTGACTTT CCAGGGCATC ACGCTGAGCG ACTGGCAGGA TGCCGGGGCA AGCTTTTTCT AG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGCG CAGACCGTCC GAACCCGCGC GAAGTGTCAA ACATACTGTC CGCCCAGACC AGGGAAACGG CAAACGCCGC CGGAGCGTCT GACTTCCTTT GGATCTGGGG CCAGTTTCTG  GACCATGACT TGTCGCTGAC CGGCACCGAA AGCGGCGTCC GCGCGAATAT TGAAGTTCCG GCAGGCGATC TCTTCTTCGA TCCCTTCGGC ACCGGAAACG CCATCATTCC GTTCACCCGG  GTAGAACAGC ACGACGGGGA ATTCCTCAAT GAGATCACCG CCTGCATCGA CGCCTCGATG ATCTATGGCT CCACCGCAGA GATGGTCGCA GCGATGCGGG GCGAAGGCGG CAAACTGAAG  ATGACCGAGG ATCATTTCCT GAACCTCGAA GGCGACGGAT TCCTGACTGG CGATGTCCGC GCCGCAGAAA ACGTCGCGCT GACCTCGATG CACACCCTGT TCACCCGCGA ACACAACCGG  CTGGTCGAAG AGCTGGCGGA CAGGGATCCG TCGCTGACGG ATGATCAGCT GTTTGAGGCC GCCCGCGCCC GGGTCGAGGC GCTGGTGCAA GCCATCACGT TCAAGGAGTT TCTGCCGGTC  CTGCTGGGCG ATAATGCCTT TGGCGCCTAC CAGGGCCATG ACCCGGATGT GAATCCGGGG ATTGCGATTG AATTCTCCAG CGCCGTCTAC CGGCTCGGGC ACACCCTGCT GTCGGCCAAC  CTGCAGCGTG TCACCGAAAA CGGCACCCTG CTGGACCCGC TGGCACTGCG CGATGCGTTT TTCCAGCCGC ATCTGGTCAG CCAGACAGGC ATGGTCGAAA ACGTCCTGCG CGGGGCGGCC  ACCCAGACTT CCGAAGCCAT CGACACCCAA GTGGTGGAGG ACGTGCGCTC CTTCCTGTTC GGGCCGCCGG GCGCCGGCGG GCTGGATCTG GCGGCGCTGA ACATCCAGCG CGGGCGCGAC  ATGGGGGTGG CCAGCTATAA TGACCTGCGC GAGGCCCTGG GCCTGCCGCG CGCGGAACGC TTCTCTGACA TTACCTCCGA CGCGGTGCTG GCCGCCAAGC TGGAAGAGGC TTATGGCGAT  ACCGATCTGG TGGACGCCTG GATTGGCGGC CTGGCCGAGG ACGCCTTTGG CAGCGGGCTG CTGGGGCAGA CGTTCTCGCT TGTCATGATT GATCAGTTCA CCCGGCTGCG CGACGGCGAC  CCGTTCTGGA GCGAGGGCCG CGAAGGCATC CCGGCAGACG AGCTGAAGGC GCTTTGGGAC ACGGCGCTGT CTGACGTTAT CCTGCGCAAT ACGGATGTTC AGAACCTGCA GAAAGATGCC  TTTGCCGCAA TGGACAGGAT CGCAGGCACT GCCGGCGATG ATGTTCTCAG CGGCAACTCC GGGCGGGATT TCATCTTTGG CCGCAAGGGT GCGGATGTCC TCTCCGGCAA GTCCGGCGAT  GACGACCTGC AAGGGGGCGG CGGCAGGGAC ATCCTCTCCG GAAACCGGGG CAGCGACTGC CTGGACGGCG GCAGCGGCGC GGACAGGCTC AAGGGAGGCG GCGCGGCCGA CTTCCTGTCA  GGCGGCAGCC ACAACGACAT TCTGAAGGGC GGATCAGGCC GCGACACCCT GGAAGGCGGC ACCGGAAACG ACACCCTGGC CGGCGGCAAG GGAAATGATG TGCTGACCGG CGGTGCGGGC  GCGGACTGTT TCGTGTTCAA CACCCTGAAA ACGGGCGCGG ACACGATTTC AGACTTCGAG CTTGGCGTCG ACAGGACCAA AATCATCGGC CCGCACACCT GGTCCGCACA GGCGATGGAC 
ACGGACGACG GGCTGGTGTT TGCGTTCGCG GATGGCTGCT CCGTGACTTT CCAGGGCATC ACGCTGAGCG ACTGGCAGGA TGCCGGGGCA AGCTTTTTCT AG 

Retrieve as FASTA