Entry information : NtPrx28-1B (NtPrx28b)
Entry ID 7264
Creation 2010-02-25 (Christophe Dunand)
Last sequence changes 2011-01-19 (Myriam Duval)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2011-01-19 (Christophe Dunand)
Peroxidase information: NtPrx28-1B (NtPrx28b)
Name (synonym) NtPrx28-1B (NtPrx28b)
Class Class III peroxidase     [Orthogroup: Prx025]*
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Nicotiana
Organism Nicotiana tabacum    [TaxId: 4097 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value NtPrx28-1B
start..stop
S start..stop
LePrx19 535 0 7..317 19..327
StPrx07 534 0 1..307 5..313
PpePrx32 425 3e-151 19..308 22..317
CpapPrx12 429 5e-151 18..307 9..308
Literature and cross-references NtPrx28-1B (NtPrx28b)
DNA ref. GenBank:   ET685082.1 [3' end]
EST ref. GenBank:   FG145964.1 [5' end]
Protein sequence: NtPrx28-1B (NtPrx28b)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317 (300)
PWM (Da):   %s   34345.6 (32445.6)  
PI (pH):   %s   9.05 (9.42) Peptide Signal:   %s   cut: 18 range:18-317
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MILPLIFLCC VFHLVSAQLR VGFYNSTCPQ AETIVRQAVQ KQFNSDRSIT AALLRMHFHD CFVRGCDASI LIKSTKSKQS ERNAGPNQTV RGFELIDNIK KSIEISCPST VSCADIITLA  TRDAVALVGG PTYAIPTGRR DGLVSNAADV NLPGPSFTVP QALQSFTNKG LSLNDMVTLL GAHTVGVAHC NFFQNRLSPV PDNTMDPTLA AQLLKTCSKS TATAFLDQNT SFTIDNQFFR 
QIMLKKGILK IDQELTLDKS SASIVSGFAS NENTFRQSFA NAMIKMASID ILVGRAGEIR NNCGVFNPPN QKGRKVL 

Retrieve as FASTA  
Remarks Partial sequence from ESTs and GSS (introns 1 and 2). Short 3' end is missing. Cultivar="Hicks Broadleaf"
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCGGTCCGGA TTCCCGGGAT AAAACCCAGA ATAGACTGTA CAAACTATCT TCAATTAGTA GAACTCTCTC AGAAACATCC TTCTGTTCTG TGAAAATGAT ATTACCATTA ATATTTCTCT  GTTGTGTTTT TCATTTAGTT TCAGCTCAAC TTCGAGTTGG CTTTTACAAT TCTACGTGTC CACAAGCTGA AACTATTGTT CGACAAGCTG TGCAAAAGCA GTTCAATAGC GACCGTTCCA  TCACTGCAGC TCTGCTTCGC ATGCATTTTC ATGACTGCTT TGTGAGAGGT TGTGATGCAT CCATACTTAT AAAGTCAACA AAGTCTAAGC AATCGGAAAG AAACGCTGGA CCAAATCAAA  CAGTACGAGG TTTCGAGCTT ATAGATAATA TTAAAAAAAG CATAGAAATA TCATGTCCAT CAACTGTTTC ATGCGCTGAC ATAATAACAC TAGCAACCCG GGATGCAGTA GCGCTAGTTG  GAGGTCCTAC CTATGCCATT CCAACTGGAA GGAGAGATGG CCTGGTTTCA AATGCAGCAG ATGTAAACTT GCCAGGTCCA TCATTTACAG TTCCACAAGC CCTCCAATCG TTCACAAACA  AAGGGCTGTC CTTAAATGAT ATGGTGACCC TATTAGGAGC TCACACTGTC GGAGTTGCAC ACTGTAATTT TTTCCAAAAT AGGCTTTCTC CGGTACCTGA TAACACCATG GATCCTACTT  TGGCTGCCCA ACTCTTGAAA ACTTGTTCGA AAAGCACCGC AACAGCGTTT TTGGATCAGA ATACATCTTT CACGATAGAC AACCAGTTCT TTAGACAGAT TATGTTAAAA AAAGGCATTC  TGAAGATTGA TCAAGAGCTT ACCTTGGATA AGTCTAGTGC TTCAATTGTT TCAGGTTTTG CTTCCAACGA GAATACCTTC AGACAGAGTT TCGCAAATGC AATGATAAAA ATGGCAAGTA 
TTGATATTCT CGTTGGACGC GCTGGAGAAA TTAGAAATAA TTGTGGGGTC TTTAACCCGC CAAATCAGAA GGGTCGCAAG GTTCTTTAG 

Retrieve as FASTA