Entry information : BamAhpC_IOP40-10
Entry ID 7284
Creation 2010-03-31 (Christophe Dunand)
Last sequence changes 2010-03-31 (Christophe Dunand)
Sequence status complete
Reviewer Marcel Zamocky
Last annotation changes 2010-06-28 (Marcel Zamocky)
Peroxidase information: BamAhpC_IOP40-10
Name BamAhpC_IOP40-10
Class AhpC like peroxiredoxin    [Orthogroup: AhpC001]
Taxonomy Bacteria Proteobacteria Betaproteobacteria Burkholderiaceae Burkholderia
Organism Burkholderia ambifaria    [TaxId: 152480 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BamAhpC_IOP40-10
start..stop
S start..stop
BamAhpC_MEX-6 389 5e-141 1..187 1..187
BamAhpC_MC40-6 390 6e-141 1..187 32..218
BUspAhpC 388 1e-140 1..187 1..187
BviAhpC 388 1e-140 1..187 1..187
Literature and cross-references BamAhpC_IOP40-10
Literature Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Larimer F., Land M.L., Hauser L., Tiedje J., Richardson P. Sequencing of the draft genome and assembly of Burkholderia ambifaria IOP40-10. US DOE Joint Genome Institute (JGI-PGF, unpublished)
Protein ref. UniProtKB:   B1FAB0
DNA ref. GenBank:   ABLC01000011.1 (64552..63989)
Protein sequence: BamAhpC_IOP40-10
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   187
PWM (Da):   %s   20616.39  
PI (pH):   %s   4.75
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MPIINTQIKP FKATAYHNGD FVPVTEENFK GKWSVVVFYP ADFTFVCPTE LGDLADRYAE FQKLGVEIYG VSTDTHFTHK AWHDTSDTIG KIKYPMIGDP TLTLSRNFDV LIEEEGMALR 
GTFVINPEGE IKLCEIHDNG IGRDAGELLR KVQAAQYIAA HPGEVCPAKW TPGAETLTPS LDLIGKI 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Strain="IOP40-10".
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCCGATCA TCAACACCCA AATCAAGCCG TTCAAGGCAA CCGCATACCA CAACGGCGAT TTCGTGCCTG TGACCGAAGA GAACTTCAAG GGCAAGTGGT CTGTCGTCGT GTTCTACCCG  GCCGACTTCA CGTTCGTCTG CCCGACCGAG CTGGGCGACC TCGCCGACCG CTACGCGGAA TTCCAGAAGC TGGGTGTCGA AATCTACGGC GTGTCGACCG ATACGCACTT CACGCACAAG  GCATGGCACG ACACGTCGGA CACGATCGGC AAGATCAAGT ACCCGATGAT CGGCGACCCG ACGCTCACGC TGTCGCGCAA CTTCGACGTG CTGATCGAGG AAGAAGGGAT GGCGCTGCGC  GGCACGTTCG TGATCAACCC GGAAGGCGAG ATCAAGCTGT GCGAAATCCA CGACAACGGC ATCGGCCGCG ACGCAGGCGA ACTGCTGCGC AAGGTGCAGG CCGCGCAATA CATCGCGGCG 
CACCCGGGTG AAGTGTGCCC GGCCAAGTGG ACGCCGGGTG CGGAAACGCT GACCCCGTCG CTCGACCTGA TCGGCAAGAT CTGA 

Retrieve as FASTA