Entry information : SmRboh07-2_1 (SmRboh07b_1)
Entry ID 7394
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmRboh07-2_1 (SmRboh07b_1)
Name (synonym) SmRboh07-2_1 (SmRboh07b_1)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh07-2_1
start..stop
S start..stop
SmRboh10-1_16 1742 0 1..845 1..845
SmRboh07-1_16 1246 0 174..845 1..695
SmRboh02-1_19 920 0 14..845 52..895
SmRboh02-2_137 915 0 14..845 59..902
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1753699..1754284 586 N° 2 1754580..1754739 160 N° 3 1754833..1754881 49 N° 4 1755127..1755459 333
N° 5 1755639..1756025 387 N° 6 1756093..1756188 96 N° 7 1756246..1756361 116 N° 8 1756410..1756512 103
N° 9 1756586..1756659 74 N° 10 1756712..1756871 160 N° 11 1756913..1757068 156 N° 12 1757115..1757243 129
N° 13 1757305..1757383 79 N° 14 1757444..1757553 110  
join(1753699..1754284,1754580..1754739,1754833..1754881,1755127..1755459,1755639 ..1756025,1756093..1756188,1756246..1756361,1756410..1756512,1756586..1756659,17 56712..1756871,1756913..1757068,1757115..1757243,1757305..1757383,1757444..17575 53)


exon

Literature and cross-references SmRboh07-2_1 (SmRboh07b_1)
DNA ref. Phytozome 11:   scaffold_1 (1753699..1757553)
Protein sequence: SmRboh07-2_1 (SmRboh07b_1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   845
PWM (Da):   %s   96698.82 Transmb domain:   %s   o319-341i370-392o428-450i475-497o507-524i657-674o
PI (pH):   %s   9.31
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEVCPKSPGDEDNVDESRMLELTIDVRNDNVRVRTVSALDDRCDDPQPSGRITLASLLRHTTQSGRFISKQISQELELIRNWAASTPRSRSRSRPSSPDRDPLVKILALSRSNSAVSSRSSASQQQPRIRKQQSGDLFLVRSRSGAETALQGLRYISRAIESADQKAVWEAVEMRFQQLAKPDGMLDRGDFGLCIGMPDSREFTGELFDALARRKHQNLQCINKEELYEFWLQLSDQSFDSRIQIFFDMCDKDADGRITEEEVKLWQLESLMLGQFASLAQDGYLNYSQTWSQTLAFEQSGKIILWARKIKYFVIENWQRVWVVGLWIFAMCGLFLWKFFTYKQTSAFKLLGYCLCSAKGAAETLKLNMALVLLPIIAGAIVAGVGIHATVHLACDFPRIIRASEEEFMIYLGRGFHYKQPTYVGILVSIEGVTGISMVIMMSIAFVLATRWFRRNLVRLPWPLHRLTGFNAFWYSHHLFMVVYVLLLLHSIFLFFTNDWVAKSTWMYLSVPVLLYSVERILSAFRARHFTVQVVKAAIHPGNVLALKMTKPPTFKYKSGMYLFIKCISISPFEWHPFSITSAPSDRHLSVHIRTVGDWTEELRRIFSALGGLAEKENVLESESSDISIIRHRFPKLQIDGPYGAPAQDYQKYDVLLLVGIGIGATPFISVLKDMLNQIKLADQQFLSMKQIRSPRKRNERKLQCPTNAYFYWVTREQGSFEWFRGVLNEVAEIDNKAVIEMHNYLTSVYEEGDARSALITMMQAFHHAKNGVDIVSGTRVRTHFARPKWYKVFSRLANIHTNSRIGVFYCGPMVLARELDALSSEFNQISNSKFEFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (13 introns). No EST. Probable splicing error => need to be verified.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGTATGTCCTAAATCGCCAGGGGACGAGGACAATGTGGACGAATCCAGGATGCTGGAATTGACAATCGATGTGCGCAACGACAATGTAAGGGTGAGGACCGTGAGCGCGCTGGAC
GATCGCTGCGACGATCCACAGCCCAGCGGCAGGATCACGCTGGCGAGCTTGCTGCGCCACACGACCCAGTCGGGGCGATTCATCTCCAAGCAAATCTCCCAGGAGCTGGAGCTGATTCGC
AACTGGGCGGCGAGCACCCCGCGATCGAGGTCGCGGTCGCGGCCCAGCTCGCCGGATCGCGACCCCCTGGTGAAGATCCTGGCGCTGAGCAGGAGCAATAGCGCGGTGTCGTCGCGATCA
TCGGCATCGCAGCAGCAGCCGCGAATTCGCAAGCAGCAGAGTGGGGATCTGTTCCTGGTGCGATCGAGATCCGGGGCCGAGACTGCGTTGCAGGGGCTCCGATACATCAGCCGCGCGATC
GAGAGCGCGGACCAAAAGGCGGTGTGGGAGGCGGTGGAGATGAGGTTTCAACAGCTCGCCAAGCCAGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTG
GTGAGCAATTTCAA
TTCCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTCACAAGTTTCCATGATGGATAAAAGTTCTTGCATGAATGGATTGCCTCTATATGTTCTACATGTTTCTC
GTGGTCCATAGCGAGAATTTCTTGACACGTTTCCAAACTTTTGACATTGTTCTTCCCCATTTTGCGTTCTTCTCCTCCCAAGCTCACATAAAACTTTTCTTTTTCTTTTATCTGATTTCT
CGGCTGAAATCTCTCAAGCTTGCAATGGTTTTTTCTTCCAGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCAT
TAACAAAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCTGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATAT
GTAAGCGCATCACTCCCACTCTTCTCACGTTTTAAATAA
TCTCATTGCCCGCCACCTTCTTATCGTTTTCTATCTTGTTCTCCTATAATTTAGGTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGGTGCGTGGAATTTAGCT
GATAGGCTCCACTTCTATCTTAAATACACTACTCTGTCTTTGGTTTTCGTCCCAGATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGC
GGCCCTCATCATGGAAGAGCTGGATCCCAACGGAATCGGCTACATTGAAGTAAGTTTCAAGTTTATAAAACCTTCACCACCTTTTCAATCTCTTCTTTGATTTGCTAGCTCTGGCAGCTC
GAGAGTTTGATGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGGGCTAGG
AAGATCAAATACTTCGTCATCGAGAACTGGCAGCGCGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCACGTACAAGCAAACCTCGGCTTTC
AAGCTTCTCGGCTACTGCCTTTGTTCGGCCAAAGGAGCCGCCGAGACGCTCAAGCTCAACATGGCTTTGGTTCTCCTCCCG
GTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGATC
GTGGGAAGTGTTGTTCCATTCGATGACAATCTAAACTTCCACAAGGCAAGCGTTTAGAACTAAAGTTTCTGAGAACCAAATAGTGAAGTAGAAAGTTCGTGCTGTGGGTTCTAAGTTCCT
GGTGACTGATACGTTTGCAGATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCACCTCGCGTGTGATTTTCCCAGGATCATCCGGGCGAGCGAGGAAGAGTTTA
TGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATTGCGTTCGTGCTGG
CAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGCTGC
TTCACTCCATCTTCTTATTTTTCACAAACGACTGGGTGGCGAAATCA
GTAAGCTGGTTACAGTTTGTTTTCCTAGCATGTTGTCCTAACAAAAGTATGAGTTTTGATCTGGTAGACATGG
ATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAG
GTGAGAAGTTTCATTGGATTGTGGAAGTTG
CTGTTAAACTCTTTTGTGTATATGAAGGCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAGAGTGGCATGTATCTATTTATCAAATGT
ATATCCATCTCTCCTTTTGAATG
GTAAGTTCAAGAAAACATTATTTTGGAAGCTATTTACATTGTTTTCAGGCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAGCGTG
CATATACGAACTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATCTTCTCCAAG
GTAAGTAGAAAACACTTAGGATAGTATTGTTATTTTGCTTAGGTTTGTTCAAGAGATCTCTTTTGT
TTTTCAGGCACTTGGAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGGTACACTATTCAAAGGTTACTTATAACTTTTAAATTGCA
AGCTTTCTCTCAGATTCCCAAAGCTTCAAATCGATGGACCTTATGGAGCTCCAGCCCAGGATTATCAGAAATATGATGTTTTACTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCA
TCAGCGTTCTCAAAGACATGCTAAACCAAATAAAACTGGCAGATCAACAACAG
GTATTATATCTTCATACCTATTATTATTATTGTTTTGCCAGTTCTTGTCGATGAAGCAGATTCGAAG
CCCCAGGAAACGAAATGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGAT
TGACAACAAG
GTGATGCCTGATCATGACAATATCACACTAAAATATATTCTTGCAGGCAGTGATCGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGGGATGCTCGCTCAGCTC
TCATCACAATGATGCAAGCTTTTCATCATGCCAAGAATGGTGTTGACATTGTCTCAGGAACAAGA
GTAAGATCTTTGATCTGATTTCATTTTGATTGCTTATAATAAATCTCTTACCAAT
ACTCAGGTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAGGCTTGCCAACATTCATACAAATTCAAGAATAGGTGAGTGAGATTTTCTCTTTTTCTTTTTTATTTTC
TTTCTTATTGCATTTGCTTATGAAGGTGTCTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTCAAAATTTGAGTTTCAC
AAAGAAAATTTTTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGTATGTCCTAAATCGCCAGGGGACGAGGACAATGTGGACGAATCCAGGATGCTGGAATTGACAATCGATGTGCGCAACGACAATGTAAGGGTGAGGACCGTGAGCGCGCTGGAC
GATCGCTGCGACGATCCACAGCCCAGCGGCAGGATCACGCTGGCGAGCTTGCTGCGCCACACGACCCAGTCGGGGCGATTCATCTCCAAGCAAATCTCCCAGGAGCTGGAGCTGATTCGC
AACTGGGCGGCGAGCACCCCGCGATCGAGGTCGCGGTCGCGGCCCAGCTCGCCGGATCGCGACCCCCTGGTGAAGATCCTGGCGCTGAGCAGGAGCAATAGCGCGGTGTCGTCGCGATCA
TCGGCATCGCAGCAGCAGCCGCGAATTCGCAAGCAGCAGAGTGGGGATCTGTTCCTGGTGCGATCGAGATCCGGGGCCGAGACTGCGTTGCAGGGGCTCCGATACATCAGCCGCGCGATC
GAGAGCGCGGACCAAAAGGCGGTGTGGGAGGCGGTGGAGATGAGGTTTCAACAGCTCGCCAAGCCAGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTG
GGATGCCAGACTCG
AGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCATTAACAAAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCTGACCAAAGCTTCGAC
TCCAGGATCCAAATCTTTTTCGATAT
GTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGCTCTGGCAGCTCGAGAGTTTGATGCTGGGACAATTCGCATCACTA
GCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGGGCTAGGAAGATCAAATACTTCGTCATCGAGAACTGGCAG
CGCGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCACGTACAAGCAAACCTCGGCTTTCAAGCTTCTCGGCTACTGCCTTTGTTCGGCCAAA
GGAGCCGCCGAGACGCTCAAGCTCAACATGGCTTTGGTTCTCCTCCCG
ATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCACCTCGCGTGTGATTTTCCCAGG
ATCATCCGGGCGAGCGAGGAAGAGTTTATGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTG
ATTATGATGAGCATTGCGTTCGTGCTGGCAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTT
TTCATGGTGGTTTACGTGCTTTTGCTGCTTCACTCCATCTTCTTATTTTTCACAAACGACTGGGTGGCGAAATCA
ACATGGATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAG
AGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAG
GCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAGAGT
GGCATGTATCTATTTATCAAATGTATATCCATCTCTCCTTTTGAATG
GCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAGCGTGCATATACGAACTGTGGGGGACTGG
ACGGAGGAGCTTAGAAGAATCTTCTCCAAG
GCACTTGGAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGATTCCCAAAGCTTCAA
ATCGATGGACCTTATGGAGCTCCAGCCCAGGATTATCAGAAATATGATGTTTTACTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCATCAGCGTTCTCAAAGACATGCTAAACCAA
ATAAAACTGGCAGATCAACAACAG
TTCTTGTCGATGAAGCAGATTCGAAGCCCCAGGAAACGAAATGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAG
CAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGATTGACAACAAG
GCAGTGATCGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGGGATGCTCGCTCA
GCTCTCATCACAATGATGCAAGCTTTTCATCATGCCAAGAATGGTGTTGACATTGTCTCAGGAACAAGA
GTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAGGCTT
GCCAACATTCATACAAATTCAAGAATAG
GTGTCTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTCAAAATTTGAGTTT
CACAAAGAAAATTTTTAA

Retrieve as FASTA