Entry information : SmRboh07-1_16 (SmRboh07a_16)
Entry ID 7395
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmRboh07-1_16 (SmRboh07a_16)
Name (synonym) SmRboh07-1_16 (SmRboh07a_16)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh07-1_16
start..stop
S start..stop
SmRboh07-2_1 1244 0 1..695 174..845
SmRboh10-1_16 1242 0 1..695 174..845
SmRboh02-2_137 989 0 2..695 162..902
SmRboh02-1_19 988 0 2..695 155..895
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2193707..2193773 67 N° 2 2193220..2193379 160 N° 3 2193078..2193126 49 N° 4 2192892..2193005 114
N° 5 2192416..2192832 417 N° 6 2191934..2192320 387 N° 7 2191771..2191866 96 N° 8 2191597..2191712 116
N° 9 2191436..2191538 103 N° 10 2191125..2191247 123 N° 11 2190870..2191007 138 N° 12 2190694..2190822 129
N° 13 2190556..2190634 79 N° 14 2190386..2190495 110  
complement(join(2190386..2190495,2190556..2190634,2190694..2190822,2190870..2191 007,2191125..2191247,2191436..2191538,2191597..2191712,2191771..2191866,2191934. .2192320,2192416..2192832,2192892..2193005,2193078..2193126,2193220..2193379,219 3707..2193773))


exon

Literature and cross-references SmRboh07-1_16 (SmRboh07a_16)
DNA ref. Phytozome 11:   scaffold_16 (2193773..2190386)
mRNA ref. JGI transcript:   412003 [Incorrect prediction]
Protein sequence: SmRboh07-1_16 (SmRboh07a_16)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   695
PWM (Da):   %s   79758.16 Transmb domain:   %s   o184-206i318-340o368-390i529-546o
PI (pH):   %s   8.76
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRFQQLAKPDGMLDRGDFGLCIGMPDSREFTGELFDALARRKHQNLQCINKEELYEFWLQLSDQSFDSRIQIFFDMCDKDADGRITEEEVKIIILSASANKLSKLNEQAEEYAALIMEELDPSGIGYIELWQLESLMLGQFASLAQDGYLNYSQTWSQTLAFEQSGKIILWARKIKYFVIENWQRVWVVGLWIFAMCGLFLWKFFAYKQTSAFKLLGYCLCSAKGAAETLKLNMALVLLPVCRNTITWLRSTIVGSVVPFDDSLNFHKIIAGAIVAGVGIHATVHLACDFPRIIRASEEEFMIYLGRGFHYKQPTYVGILVSIEGVTGISMVIMMSIAFVLATRWFRRNLVRLPWPLHRLTGFNAFWYSHHLFMVVYVLLLLHSIFLFLTNDWVAKSTWMYLSVPVLLYSVERILSAFRARHFTVQVVKAAIHPGNVLALKMTKPPTFKYKSGMYLFIKCISISPFEWHPFSITSAPSDRHLTVHIRTVGDWTEELRRIFSLSLRFPKLLIDGPYGAPAQDYQKYDVLLLVGIGIGATPFISIRSPRKRSERKLQCPTNAYFYWVTREQGSFEWFRGVLNEVAEIDNKAVIEMHNYLTSVYEEGDARSALITMMQAFHHAKNGVDIVSGTRVRTHFARPKWYKVFSKLANIHTNSRIGVFYCGPMVLARELDALSSEFNQISNSKFEFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic. No EST. Probable uncorrect prediction => need to be verified.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTGGTGAGCAATTCCAATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCACACACACACACACACACACACACACTCACAAATTTCCATGATGGATCAAAGTTCTTGCATGATTGGATTGCCTCTACATGTTCTACATGTTTCTCGTGGTCC
ATAGCAAGAATTTCTTGACACGTTTCCAAACTTTTGACATTGTTCTTCCCCATTTTGCGTTCTTCTCCTCCCAAGCTCACATAAAACTTTTCTTTTTCTTTTATCTGATTTCTCGGCTGA
AATCTCTCAAGCTTGCAATGGTTTTTTCTTCCAGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCATTAACAAA
GAGGAGCTCTACGAGTTTTGGTTGCAGCTATCGGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATAT
GTAAGCGCATCACTCCCACTCTTCTCACGTTTTAAATAATCTCATT
GCCCGCCACCTTCTTATCGTTTTCTATCTTGTTCTCCTATAATTTAGGTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGGTGCGTGGAATTTAGCTGATAGGT
TCCACTTCTATCTTAAATACACTACTCTGTCTTTGGTTTTCGTCCCAGATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGCGGCCCTC
ATCATGGAAGAGCTGGATCCTAGCGGAATCGGCTACATTGAA
GTAAGTTTCAAGTTTATAAAACCTTCACCACCTTTTCAATCTCTTCTTTGATTTGCTAGCTCTGGCAGCTCGAGAGTT
TGATGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGGGCTAGGAAGATCA
AATACTTCGTCATCGAGAACTGGCAGCGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTTCAAGCTTC
TCGGCTACTGCCTTTGCTCGGCCAAAGGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTCCCGGTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGATCGTGGGAA
GTGTTGTTCCATTCGATGACAGTCTAAACTTCCACAAG
GCAAGCGTTTAGAACTAAAGTTTCTGAGAACCAAATAGTGAAGTAGAAAGTTCGTGCTGTGGGTTCTAAGTTCCTGGTGACT
GATACGTTTGCAGATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCACCTCGCGTGTGATTTTCCCAGGATCATTCGGGCGAGCGAGGAAGAGTTTATGATCTA
TCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATCGCGTTCGTGCTGGCAACGAG
ATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGCTGCTTCACTC
CATCTTCTTATTTCTCACAAACGACTGGGTGGCGAAATCA
GTAAGCTGGTTACAGTTTGTTTTCCCAGCATGCTGTCCTAACCAAAGTATGAGTTTTGATCTCGTAGACATGGATGTATC
TCTCTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAG
GTGAGAAGTCTCATTAGATTTGTGGAAGTTGCTGTTA
AACTCTTTCGTGTATATGAAGGCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAAAGTGGCATGTATCTATTTATCAAATGTATATCC
ATCTCTCCTTTTGAATG
GTAAGTTAAGGAAAACATTATTTTGGAAGCTATTTACTCTAGAGTTTATTGTTTTCAGGCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAC
TGTGCATATACGAACTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATTTTCTCCAAT
GTAAGTAGAAAACACTTACGATAGTATTGTTATTTTGCTCAGGTTTGTTCAAAACATCTCTT
TTGTTTTCCAGGCACTTGAAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGGTACACTACTCCAAGGTTACTTTAAACTTTAAAAT
TGCAAGCTTTCTCTCAGATTCCCAAAGCTGCTAATCGATGGACCTTATGGAGCTCCAGCCCAAGATTATCAGAAATATGATGTTTTATTGCTCGTTGGAATTGGAATTGGAGCAACGCCT
TTCATCAGC
GTTCTCAAAGACATGCAAACCAAATAAAAGTGGCAGATCAACAACAGGTATTATATCTTCATACCTATTATTATTTATATATTATTATTGTTTTGCCAGTTCTTGTCGATG
AAGCAGATTCGAAGCCCCAGGAAACGAAGTGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAAC
GAAGTTGCCGAGATTGACAACAAG
GTGATGCCTGATCATGACAATACAACACTAAAATATTTTTCTTACAGGCAGTGATTGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGCG
ATGCTCGCTCAGCTCTCATCACAATGATGCAAGCTTTTCATCACGCAAAGAATGGTGTTGACATTGTCTCGGGAACAAGA
GTAAGATCTTTGATTTGATTTCATTTTGATTGCTTAATAA
ATCTCTTACTGATACTCAGGTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAAGCTTGCCAACATTCATACAAACTCAAGAATAGGTGAGTGAAATTTTCTCTTTTT
CTTTTTTCTTTTCTTTCTTATTGCATTTGCTTATGAAGGTGTTTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTCAAA
ATTTGAGTTTCACAAGGAAAATTTTTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGG
AGGAAGCACCAAAACCTCCAGTGCATTAACAAAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCGGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATAT
GTGTGACAAGGAC
GCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAG
ATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGCGGCCCTCATCATGGAAGAG
CTGGATCCTAGCGGAATCGGCTACATTGAA
CTCTGGCAGCTCGAGAGTTTGATGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACT
CTGGCATTTGAACAATCCGGGAAGATCATACTCTGGGCTAGGAAGATCAAATACTTCGTCATCGAGAACTGGCAGCGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTT
TTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTTCAAGCTTCTCGGCTACTGCCTTTGCTCGGCCAAAGGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTC
CCGGTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGATCGTGGGAAGTGTTGTTCCATTCGATGACAGTCTAAACTTCCACAAG
ATAATTGCAGGAGCCATCGTTGCGGGGGTTGGA
ATCCACGCGACGGTTCACCTCGCGTGTGATTTTCCCAGGATCATTCGGGCGAGCGAGGAAGAGTTTATGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATC
TTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATCGCGTTCGTGCTGGCAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGG
TTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGCTGCTTCACTCCATCTTCTTATTTCTCACAAACGACTGGGTGGCGAAATCA
ACATGG
ATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAG
GCTGCTATTCATCCTGGAAATGTTCTTGCC
TTGAAGATGACAAAGCCACCTACGTTCAAGTATAAAAGTGGCATGTATCTATTTATCAAATGTATATCCATCTCTCCTTTTGAATG
GCATCCATTTTCTATTACCTCCGCTCCTAGTGAC
AGGCATTTAACTGTGCATATACGAACTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATTTTCTCCAAT
CTTTCTCTCAGATTCCCAAAGCTGCTAATCGATGGACCTTATGGAGCTCCA
GCCCAAGATTATCAGAAATATGATGTTTTATTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCATCAGC
ATTCGAAGCCCCAGGAAACGAAGTGAAAGAAAGCTGCAATGTCCCACG
AATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGATTGACAACAAG
GCAGTGATTGAGATGCATAACTATCTCACC
AGCGTTTATGAAGAAGGCGATGCTCGCTCAGCTCTCATCACAATGATGCAAGCTTTTCATCACGCAAAGAATGGTGTTGACATTGTCTCGGGAACAAGA
GTTAGAACTCACTTTGCTCGA
CCCAAATGGTATAAAGTATTTTCCAAGCTTGCCAACATTCATACAAACTCAAGAATAG
GTGTTTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTT
AACCAAATATCCAACTCAAAATTTGAGTTTCACAAGGAAAATTTTTAA

Retrieve as FASTA